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The map label for this gene is yfmS [H]

Identifier: 187932525

GI number: 187932525

Start: 3032389

End: 3033222

Strand: Reverse

Name: yfmS [H]

Synonym: CLL_A2951

Alternate gene names: 187932525

Gene position: 3033222-3032389 (Counterclockwise)

Preceding gene: 187935346

Following gene: 187935218

Centisome position: 79.81

GC content: 27.1

Gene sequence:

>834_bases
GTGATAAATAAAATATCTGATAATGAATTAATGCAAGCATTTTATACATTAATGCCTTGTTTTAAATATTATTTTGAAGA
TGAATTAATTTTTACAATATCTAATACAGAAAGATTTTTATTAGTTAAAGACAGTGAAAATTTAAAAATGCAATCTAAAA
CAGGAGATATAATCCCTGAGGGATGTGCAGCTGATGTTTGTCTAAAGGCTAAAAAACAAGTATCTGTTATGGTACCAGAA
AGTGTATTTGGAGTAACATTAAAAACAATAGCAATTCCAGTTCTTGAAGGTAACGAAATAGCAGGAACAATAGTAATTGG
TATGAGTATAGAGAGAAAAGAAAAAATGGCAGATATGTCAAATACTTTGTCAGAGTCATTAGGACAAATAAGTGATAATT
TATTTGATATGTCTTCAGGACTTCAAAAAATATCTGAAACTAATTTAGATATAGAAAAATTTATAGAACTTACAAATGAA
AATTATAAGAAAACAGATGGTGTTTTGAAATTTATAGAAAGTATAGCAAAACAAACTAATATGCTTGGTTTAAATGCAGC
TATAGAATCAGCAAGAGCAGGAGAATATGGAAAAGGATTTAGTGTAGTATCTAATGAGATTAGAAAATTATCTCATTCAA
GTAGTGAATCAATAAATGAGATTAATAAAATATTGAGTAGTATTCAAAATTCAATAAATGAGATATATAATAGATTTAAT
GCATCAAATTTATTATTAGATGGACAGGCATCTGGATTAGAAGAAATTACAGCAACGGTTCAAGAACTTAATTCTACTGC
AGTGCTTCTAAAAGAATTTGCCGCTACAATATAA

Upstream 100 bases:

>100_bases
TAGTATTATTTAAGTTTACAATAATACATATTTTAATATTAATAGATAGTTAAATTGTTAATATTAAAACAAACAGATAA
TAATTTAGGAGTGATTTTTA

Downstream 100 bases:

>100_bases
AATGGGAGATGTTAATATGAAAATAACCACATTAATAGAAAATACACAGGATAAGGATGAGAAGCTAAAAAATGAACATG
GTCTTTCTATGTTTATTGAA

Product: methyl-accepting chemotaxis protein (MCP) signaling domain

Products: NA

Alternate protein names: Methyl-accepting chemotaxis protein [H]

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MINKISDNELMQAFYTLMPCFKYYFEDELIFTISNTERFLLVKDSENLKMQSKTGDIIPEGCAADVCLKAKKQVSVMVPE
SVFGVTLKTIAIPVLEGNEIAGTIVIGMSIERKEKMADMSNTLSESLGQISDNLFDMSSGLQKISETNLDIEKFIELTNE
NYKKTDGVLKFIESIAKQTNMLGLNAAIESARAGEYGKGFSVVSNEIRKLSHSSSESINEINKILSSIQNSINEIYNRFN
ASNLLLDGQASGLEEITATVQELNSTAVLLKEFAATI

Sequences:

>Translated_277_residues
MINKISDNELMQAFYTLMPCFKYYFEDELIFTISNTERFLLVKDSENLKMQSKTGDIIPEGCAADVCLKAKKQVSVMVPE
SVFGVTLKTIAIPVLEGNEIAGTIVIGMSIERKEKMADMSNTLSESLGQISDNLFDMSSGLQKISETNLDIEKFIELTNE
NYKKTDGVLKFIESIAKQTNMLGLNAAIESARAGEYGKGFSVVSNEIRKLSHSSSESINEINKILSSIQNSINEIYNRFN
ASNLLLDGQASGLEEITATVQELNSTAVLLKEFAATI
>Mature_277_residues
MINKISDNELMQAFYTLMPCFKYYFEDELIFTISNTERFLLVKDSENLKMQSKTGDIIPEGCAADVCLKAKKQVSVMVPE
SVFGVTLKTIAIPVLEGNEIAGTIVIGMSIERKEKMADMSNTLSESLGQISDNLFDMSSGLQKISETNLDIEKFIELTNE
NYKKTDGVLKFIESIAKQTNMLGLNAAIESARAGEYGKGFSVVSNEIRKLSHSSSESINEINKILSSIQNSINEIYNRFN
ASNLLLDGQASGLEEITATVQELNSTAVLLKEFAATI

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=102, Percent_Identity=37.2549019607843, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789453, Length=118, Percent_Identity=33.8983050847458, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788195, Length=120, Percent_Identity=34.1666666666667, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787690, Length=120, Percent_Identity=35.8333333333333, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI2367378, Length=73, Percent_Identity=42.4657534246575, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004089 [H]

Pfam domain/function: PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 30574; Mature: 30574

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINKISDNELMQAFYTLMPCFKYYFEDELIFTISNTERFLLVKDSENLKMQSKTGDIIPE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCC
GCAADVCLKAKKQVSVMVPESVFGVTLKTIAIPVLEGNEIAGTIVIGMSIERKEKMADMS
CHHHHHHHHHHHHEEEECCHHHHHHHHHHHEEEEECCCCEEEEEEEECCHHHHHHHHHHH
NTLSESLGQISDNLFDMSSGLQKISETNLDIEKFIELTNENYKKTDGVLKFIESIAKQTN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
MLGLNAAIESARAGEYGKGFSVVSNEIRKLSHSSSESINEINKILSSIQNSINEIYNRFN
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
ASNLLLDGQASGLEEITATVQELNSTAVLLKEFAATI
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MINKISDNELMQAFYTLMPCFKYYFEDELIFTISNTERFLLVKDSENLKMQSKTGDIIPE
CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCEEECCCCCCCCC
GCAADVCLKAKKQVSVMVPESVFGVTLKTIAIPVLEGNEIAGTIVIGMSIERKEKMADMS
CHHHHHHHHHHHHEEEECCHHHHHHHHHHHEEEEECCCCEEEEEEEECCHHHHHHHHHHH
NTLSESLGQISDNLFDMSSGLQKISETNLDIEKFIELTNENYKKTDGVLKFIESIAKQTN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
MLGLNAAIESARAGEYGKGFSVVSNEIRKLSHSSSESINEINKILSSIQNSINEIYNRFN
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
ASNLLLDGQASGLEEITATVQELNSTAVLLKEFAATI
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]