| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is ybiO [H]
Identifier: 187930414
GI number: 187930414
Start: 3505197
End: 3507470
Strand: Reverse
Name: ybiO [H]
Synonym: Rpic_3348
Alternate gene names: 187930414
Gene position: 3507470-3505197 (Counterclockwise)
Preceding gene: 187930415
Following gene: 187930412
Centisome position: 88.96
GC content: 67.81
Gene sequence:
>2274_bases ATGCGTACTCATTCCCTGTTTTGCACGCGGCGACTGTGGCCGCTCGCATCGCTCCTGCTCTTGCTGATGGCGTGCGTCGC CAACATGGCCGATGCCGCGCCGGTGTCGTTTGCCAAGCTGGCCGGGCTGCCGACTTCCACCGCCAGCGCATCGGCGCCCG CGGCGGACCCTGCGCAGACGCGCCAGTCGCTCGACACCGTCATCACGCTGCTCAACAACGACCAGCAACGCACCGCCCTC GTCAATGAACTGAAGCAGTTGCGAGACGGCATGAGCGCGCAGCAGAAGGTGCAGGCCGAACAGGCGCCGGGCCTGCTGGG CGCGGTGGCTTCGCTCATCGAGAACGGCTCGTTGCAGGCCGATGTGGAAGCCGGTGCGCCGCGCTACTGGCTGCGCCGCA TCGAGGCCGCCAGCGGGAACGCGAGCCTGCTCGTCGCGCCCGAGAAGCGCATGCCGCTGCTTGCCGACCTTGCGAGCACC GTTGGCATCTGGGCCGCCATCGCCGCTGGCCTGCTGGGCCTGGGCTGGTTGATCCGCCGCGTGTTTGGCCTCACCGTGGG CCTCGGGCCGCACCCGACGACGCGCGCGCTATTGATCGACGCGCTGCGCAAGATCGGCCCGTGGGCGATTTCCTTTGCCG TCATCATGCGGCTCGACCACGACGCCTCGCCGGGCTTCGTCCTGGCGCTGGTGCTGGCCTACGCCATCGTATGGGGCGCG ATCATCACGGCGGGCGTGGCGATGCTGTTCTCGCTGTTTTCCGGCAGCGCGCATCGGCGCGTGGCAGTGGAATACCTGTT CAAGCATGGCATGTGGCCGATCTTTCTGACGGCCAGTCTGGGCGCCTGCGGCGATGCGCTGGTGGACCCGCGCGTCGCGT TGGTGCTGGGCGGCTCGCTCAGTCTGCTGCTGGCCACGGTGTGCAACGTGGTGTCTTCATTGATGCTGGCGGTGGGCGCG TTGTGGGCGCGGCGGCCCATCGGCCAGTTGATCGCCAATCGTCCGCTGGAGCTGCGCAGCGGCGAACACACGGGCAATCA GATCCGTCGCCTGCTGGCGGCGTTCTGGCCAGTGCCGGTGGTGGTGCTGGCGGGCGCCACCGTCATGGCCACGCTGACGA TGCCCGACAACGTTGACGTCGTGGCGCGCCGCGCGGTGATGACGTCGCTGCTGCTGGTGGCCGCCTTCTTCCTGTCGGCG CTGGTCCGCCCCCGCGCGAATTGGCGCGCGCACCTGCGTCTGACGCGCAGCTCGCCTTATCTCGAGCGGCTCAAGCATTT TGTTGGCGCGCTGATCAAGCTCGTCATCTGGATCGCCTTCCTAGAGCTGGTGCTGCGCGTGTGGGGCCATACGCTGGTGG AGGTCACACACAGTTCGGTCAACGGCAAGCGCATCGCCGATGCCTTGGTGGGCCTGATCGGCACCGTGTTTGCCACCTGG CTCGTCTGGATCCTGCTCGACACGGCGATCCTGCGGGCGCTGTCGCCGGCCTCCGCGCGGGCGCAGCCCAGCACGCGTGC ACTGACCATCCTCCCGCTGCTGCGCAATGGCCTGAAGGTGACGCTGGTGGTGACGGCCAGCATTGGCGTGCTGGCCAACC TGGGCGTGAACGTGACGCCGCTGGTGGCCGGCGCCGGCGTGATCGGCCTGGCGGTCGGCTTTGGCGCGCAGTCGCTGGCG CAGGACTTCATCACCGGCATCTTCATCCTGATGGAAGACACGATCAGCGTAGGCGATGTGGTGGACGTGGGCGTGGCCAC GGGCTCCGTCATCAACCTGACTATCCGGACGGTGCGGCTGCGCGATGGCACGGGCGCGGTGCTGTCGATTCCGTTCAGCC AGATCAAGACCGTGCGCAACCTCTCGCGCGATTACTCGTTTGCCGACTTTGAAGTGCGCGTGGCGATGGAGGCCGAGCCC CAGCAGGCGATCGATCTCGTGCGCGCGGCGGCTGACCAGATTGCGGGTGAGCCGCGCTTTGGCTACACGTTGCTCGGCGG TGCGGAAATCTTCGGGCTGGATCGCTTTGAAGGGGGCGCGATGATCGTCAAGGGGCGGTTCAAGACGCGTCCGCAGAAGC AGGCGGATGTGTTGCGGGCCTTCAACGTTGTGCTCAAGGATGCGTTCGACAAGGCGCACGTGCCGCTGGCGGCGCCGGGG ACGGTGTTGCGGACTTCGGCGGCGTTGGAGGAGTGGATGGCGCGGGTTGGTGGGCCGGATGAGCGGAAGGTGCCGCCTAC GGCCGAGCCACCCGCTGCGGGGGCGCCGGCTTAA
Upstream 100 bases:
>100_bases GCGCGCCCCGCTGCCACCGGGCGCCAAGCGCTGAGGTTGTACGCCCGGGGAATTCGCGTATCGTGCCGTGATCGATGTCT GCACGATCGCTTTCCCTGTC
Downstream 100 bases:
>100_bases AGGTGTGTTGCTGGTCCATCCCGCGTATCGTCCCCTGCCGGGGCCGACTCACTTTCTTTGTCTTGCCAAAGAAAGTAAGC AAAGAAAGGCGCGCCCGAGA
Product: mechanosensitive ion channel MscS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 757; Mature: 757
Protein sequence:
>757_residues MRTHSLFCTRRLWPLASLLLLLMACVANMADAAPVSFAKLAGLPTSTASASAPAADPAQTRQSLDTVITLLNNDQQRTAL VNELKQLRDGMSAQQKVQAEQAPGLLGAVASLIENGSLQADVEAGAPRYWLRRIEAASGNASLLVAPEKRMPLLADLAST VGIWAAIAAGLLGLGWLIRRVFGLTVGLGPHPTTRALLIDALRKIGPWAISFAVIMRLDHDASPGFVLALVLAYAIVWGA IITAGVAMLFSLFSGSAHRRVAVEYLFKHGMWPIFLTASLGACGDALVDPRVALVLGGSLSLLLATVCNVVSSLMLAVGA LWARRPIGQLIANRPLELRSGEHTGNQIRRLLAAFWPVPVVVLAGATVMATLTMPDNVDVVARRAVMTSLLLVAAFFLSA LVRPRANWRAHLRLTRSSPYLERLKHFVGALIKLVIWIAFLELVLRVWGHTLVEVTHSSVNGKRIADALVGLIGTVFATW LVWILLDTAILRALSPASARAQPSTRALTILPLLRNGLKVTLVVTASIGVLANLGVNVTPLVAGAGVIGLAVGFGAQSLA QDFITGIFILMEDTISVGDVVDVGVATGSVINLTIRTVRLRDGTGAVLSIPFSQIKTVRNLSRDYSFADFEVRVAMEAEP QQAIDLVRAAADQIAGEPRFGYTLLGGAEIFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKDAFDKAHVPLAAPG TVLRTSAALEEWMARVGGPDERKVPPTAEPPAAGAPA
Sequences:
>Translated_757_residues MRTHSLFCTRRLWPLASLLLLLMACVANMADAAPVSFAKLAGLPTSTASASAPAADPAQTRQSLDTVITLLNNDQQRTAL VNELKQLRDGMSAQQKVQAEQAPGLLGAVASLIENGSLQADVEAGAPRYWLRRIEAASGNASLLVAPEKRMPLLADLAST VGIWAAIAAGLLGLGWLIRRVFGLTVGLGPHPTTRALLIDALRKIGPWAISFAVIMRLDHDASPGFVLALVLAYAIVWGA IITAGVAMLFSLFSGSAHRRVAVEYLFKHGMWPIFLTASLGACGDALVDPRVALVLGGSLSLLLATVCNVVSSLMLAVGA LWARRPIGQLIANRPLELRSGEHTGNQIRRLLAAFWPVPVVVLAGATVMATLTMPDNVDVVARRAVMTSLLLVAAFFLSA LVRPRANWRAHLRLTRSSPYLERLKHFVGALIKLVIWIAFLELVLRVWGHTLVEVTHSSVNGKRIADALVGLIGTVFATW LVWILLDTAILRALSPASARAQPSTRALTILPLLRNGLKVTLVVTASIGVLANLGVNVTPLVAGAGVIGLAVGFGAQSLA QDFITGIFILMEDTISVGDVVDVGVATGSVINLTIRTVRLRDGTGAVLSIPFSQIKTVRNLSRDYSFADFEVRVAMEAEP QQAIDLVRAAADQIAGEPRFGYTLLGGAEIFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKDAFDKAHVPLAAPG TVLRTSAALEEWMARVGGPDERKVPPTAEPPAAGAPA >Mature_757_residues MRTHSLFCTRRLWPLASLLLLLMACVANMADAAPVSFAKLAGLPTSTASASAPAADPAQTRQSLDTVITLLNNDQQRTAL VNELKQLRDGMSAQQKVQAEQAPGLLGAVASLIENGSLQADVEAGAPRYWLRRIEAASGNASLLVAPEKRMPLLADLAST VGIWAAIAAGLLGLGWLIRRVFGLTVGLGPHPTTRALLIDALRKIGPWAISFAVIMRLDHDASPGFVLALVLAYAIVWGA IITAGVAMLFSLFSGSAHRRVAVEYLFKHGMWPIFLTASLGACGDALVDPRVALVLGGSLSLLLATVCNVVSSLMLAVGA LWARRPIGQLIANRPLELRSGEHTGNQIRRLLAAFWPVPVVVLAGATVMATLTMPDNVDVVARRAVMTSLLLVAAFFLSA LVRPRANWRAHLRLTRSSPYLERLKHFVGALIKLVIWIAFLELVLRVWGHTLVEVTHSSVNGKRIADALVGLIGTVFATW LVWILLDTAILRALSPASARAQPSTRALTILPLLRNGLKVTLVVTASIGVLANLGVNVTPLVAGAGVIGLAVGFGAQSLA QDFITGIFILMEDTISVGDVVDVGVATGSVINLTIRTVRLRDGTGAVLSIPFSQIKTVRNLSRDYSFADFEVRVAMEAEP QQAIDLVRAAADQIAGEPRFGYTLLGGAEIFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKDAFDKAHVPLAAPG TVLRTSAALEEWMARVGGPDERKVPPTAEPPAAGAPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI87081787, Length=307, Percent_Identity=32.2475570032573, Blast_Score=112, Evalue=9e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 80487; Mature: 80487
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTHSLFCTRRLWPLASLLLLLMACVANMADAAPVSFAKLAGLPTSTASASAPAADPAQT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHH RQSLDTVITLLNNDQQRTALVNELKQLRDGMSAQQKVQAEQAPGLLGAVASLIENGSLQA HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEE DVEAGAPRYWLRRIEAASGNASLLVAPEKRMPLLADLASTVGIWAAIAAGLLGLGWLIRR ECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFGLTVGLGPHPTTRALLIDALRKIGPWAISFAVIMRLDHDASPGFVLALVLAYAIVWGA HHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH IITAGVAMLFSLFSGSAHRRVAVEYLFKHGMWPIFLTASLGACGDALVDPRVALVLGGSL HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCEEEEECCHH SLLLATVCNVVSSLMLAVGALWARRPIGQLIANRPLELRSGEHTGNQIRRLLAAFWPVPV HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH VVLAGATVMATLTMPDNVDVVARRAVMTSLLLVAAFFLSALVRPRANWRAHLRLTRSSPY HHHCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHH LERLKHFVGALIKLVIWIAFLELVLRVWGHTLVEVTHSSVNGKRIADALVGLIGTVFATW HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LVWILLDTAILRALSPASARAQPSTRALTILPLLRNGLKVTLVVTASIGVLANLGVNVTP HHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHHHHCCCEEEEEEEEHHHHHHHCCCCCCH LVAGAGVIGLAVGFGAQSLAQDFITGIFILMEDTISVGDVVDVGVATGSVINLTIRTVRL HHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEEEEEEE RDGTGAVLSIPFSQIKTVRNLSRDYSFADFEVRVAMEAEPQQAIDLVRAAADQIAGEPRF ECCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCC GYTLLGGAEIFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKDAFDKAHVPLAAPG CEEEECCCCEEECEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TVLRTSAALEEWMARVGGPDERKVPPTAEPPAAGAPA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRTHSLFCTRRLWPLASLLLLLMACVANMADAAPVSFAKLAGLPTSTASASAPAADPAQT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHH RQSLDTVITLLNNDQQRTALVNELKQLRDGMSAQQKVQAEQAPGLLGAVASLIENGSLQA HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEE DVEAGAPRYWLRRIEAASGNASLLVAPEKRMPLLADLASTVGIWAAIAAGLLGLGWLIRR ECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFGLTVGLGPHPTTRALLIDALRKIGPWAISFAVIMRLDHDASPGFVLALVLAYAIVWGA HHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH IITAGVAMLFSLFSGSAHRRVAVEYLFKHGMWPIFLTASLGACGDALVDPRVALVLGGSL HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCEEEEECCHH SLLLATVCNVVSSLMLAVGALWARRPIGQLIANRPLELRSGEHTGNQIRRLLAAFWPVPV HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH VVLAGATVMATLTMPDNVDVVARRAVMTSLLLVAAFFLSALVRPRANWRAHLRLTRSSPY HHHCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHH LERLKHFVGALIKLVIWIAFLELVLRVWGHTLVEVTHSSVNGKRIADALVGLIGTVFATW HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LVWILLDTAILRALSPASARAQPSTRALTILPLLRNGLKVTLVVTASIGVLANLGVNVTP HHHHHHHHHHHHHCCCCCCCCCCCCHHEEEHHHHHCCCEEEEEEEEHHHHHHHCCCCCCH LVAGAGVIGLAVGFGAQSLAQDFITGIFILMEDTISVGDVVDVGVATGSVINLTIRTVRL HHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEEEEEEE RDGTGAVLSIPFSQIKTVRNLSRDYSFADFEVRVAMEAEPQQAIDLVRAAADQIAGEPRF ECCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCC GYTLLGGAEIFGLDRFEGGAMIVKGRFKTRPQKQADVLRAFNVVLKDAFDKAHVPLAAPG CEEEECCCCEEECEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TVLRTSAALEEWMARVGGPDERKVPPTAEPPAAGAPA HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]