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The map label for this gene is 187930332

Identifier: 187930332

GI number: 187930332

Start: 3415514

End: 3416173

Strand: Reverse

Name: 187930332

Synonym: Rpic_3265

Alternate gene names: NA

Gene position: 3416173-3415514 (Counterclockwise)

Preceding gene: 187930335

Following gene: 187930331

Centisome position: 86.65

GC content: 62.27

Gene sequence:

>660_bases
ATGAACCGCATAGCGAACGTTTTTGCTGTCGCAGCGCTGTCCCTGGCATCGGTCTTCTCCATGGCCCATGCCGAAGAGCA
AAAAGTCGCCAAGGCCGACGCCGCGCGCGGCGAAACGATCTTCAACAACGGTGTGCCGGCCAATGGCGTGCCCGCGTGTA
CCAGTTGTCACGGCGCAGGCGGCAACAGCGCCATGAACGTCAACCCGAAGCTGGCCGGCCAGCACGCCGAATACGTCGAA
AAGCAGCTGAAGGATTTCAAGGCAAAGACTGATCGCAACAACCCGGTCATGTCGCTGTACGCCAGTGCGCTGTCGGATCA
GGACATGAAGGACATCGGCGCCTACCTGGGCAAGCAGCCGGCTTGGAAGCCGGGTTCGGCCAAGAGCAAGGACACGATCG
AACTGGGCCAGAAGCTGTATCGTGGCGGGGACGCCAAGCGCGGTATCGCAGCGTGCGCGGGCTGTCACGGCCCGACGGGT
GCTGGCATCCCGGCGCAGTATCCGCGTATCGCGGGTCAGTTCTCTGAATACACTGAAGCTCAACTGGTTGCCTTCCAGAG
CGGCACCCGCAAGAACAGCGTACAGATGCACGACCTGGCCGGTCGCATGACGGCCCAGCAGATCAAGGCGGTGGCCGACT
ACATTGCCGGCCTGCGCTAA

Upstream 100 bases:

>100_bases
GCGCTGGTCTGGCTCGAGGAGAAGGGGATGCCCGGCGCCGCAGGGTCCCGCGTTGGGCGGCGCACGCAGCATTCGAAAAC
AATCTAAACAAGGTGTGCGA

Downstream 100 bases:

>100_bases
TCTGCCGCACCCGGCTGTCATGTGACAGTCGCACAATCAACAAGAAGAACAGGGTGGCAATGCGCCTGGCATCGCCACCC
TGTTTTCGTTTTTGAACAGG

Product: cytochrome c class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MNRIANVFAVAALSLASVFSMAHAEEQKVAKADAARGETIFNNGVPANGVPACTSCHGAGGNSAMNVNPKLAGQHAEYVE
KQLKDFKAKTDRNNPVMSLYASALSDQDMKDIGAYLGKQPAWKPGSAKSKDTIELGQKLYRGGDAKRGIAACAGCHGPTG
AGIPAQYPRIAGQFSEYTEAQLVAFQSGTRKNSVQMHDLAGRMTAQQIKAVADYIAGLR

Sequences:

>Translated_219_residues
MNRIANVFAVAALSLASVFSMAHAEEQKVAKADAARGETIFNNGVPANGVPACTSCHGAGGNSAMNVNPKLAGQHAEYVE
KQLKDFKAKTDRNNPVMSLYASALSDQDMKDIGAYLGKQPAWKPGSAKSKDTIELGQKLYRGGDAKRGIAACAGCHGPTG
AGIPAQYPRIAGQFSEYTEAQLVAFQSGTRKNSVQMHDLAGRMTAQQIKAVADYIAGLR
>Mature_219_residues
MNRIANVFAVAALSLASVFSMAHAEEQKVAKADAARGETIFNNGVPANGVPACTSCHGAGGNSAMNVNPKLAGQHAEYVE
KQLKDFKAKTDRNNPVMSLYASALSDQDMKDIGAYLGKQPAWKPGSAKSKDTIELGQKLYRGGDAKRGIAACAGCHGPTG
AGIPAQYPRIAGQFSEYTEAQLVAFQSGTRKNSVQMHDLAGRMTAQQIKAVADYIAGLR

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor in an anaerobic electron transport chain [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 cytochrome c domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 23073; Mature: 23073

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRIANVFAVAALSLASVFSMAHAEEQKVAKADAARGETIFNNGVPANGVPACTSCHGAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCC
GNSAMNVNPKLAGQHAEYVEKQLKDFKAKTDRNNPVMSLYASALSDQDMKDIGAYLGKQP
CCCEEECCHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
AWKPGSAKSKDTIELGQKLYRGGDAKRGIAACAGCHGPTGAGIPAQYPRIAGQFSEYTEA
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
QLVAFQSGTRKNSVQMHDLAGRMTAQQIKAVADYIAGLR
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRIANVFAVAALSLASVFSMAHAEEQKVAKADAARGETIFNNGVPANGVPACTSCHGAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCC
GNSAMNVNPKLAGQHAEYVEKQLKDFKAKTDRNNPVMSLYASALSDQDMKDIGAYLGKQP
CCCEEECCHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
AWKPGSAKSKDTIELGQKLYRGGDAKRGIAACAGCHGPTGAGIPAQYPRIAGQFSEYTEA
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
QLVAFQSGTRKNSVQMHDLAGRMTAQQIKAVADYIAGLR
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA