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The map label for this gene is ccsA [H]

Identifier: 187930330

GI number: 187930330

Start: 3412002

End: 3413189

Strand: Reverse

Name: ccsA [H]

Synonym: Rpic_3263

Alternate gene names: 187930330

Gene position: 3413189-3412002 (Counterclockwise)

Preceding gene: 187930331

Following gene: 187930329

Centisome position: 86.57

GC content: 63.22

Gene sequence:

>1188_bases
ATGGAAGCGACCAATCCCCAAACGACCGTGGCGAGCGCTGATCTGGGTGCGCTGAAGCGTCCGTCGTATTTCCGCCGCCT
GGGCTGGTTTGACTGGCTGTTTGCTGCAATGCTGGCCGCCGGCGCCGGTTACGCCTTCTCGCGCTACGGCGCCTACATGG
ACGGCTACGAGCGCGGCATTCTCGTTGCCGCCGTGCCCGCCTTCGCATGGCTTGGCTGGACTTGGAAGCCGGTGCGCGTA
CTGATGATCGGCATCGCCGTGTTGTCGCTGTTCGGTATCTCACAGTACGCCGGTGCCAACGGCCCGGATCTCGCCCGCGC
TGAGCATGCCTTCTTCCTCAAGTATTTCCTTGCCAGCCAGTCGGCCATCCTCTGGATGAGCGCGCTGATCTTCCTGTCCA
CGCTGTTTTTCTGGACCGGGCTGGCGCTGCGCTGGGAAGCGGGCGGGGCCATCGGCAGCAAGCTGTGCTGGGCAGCGGTG
GTGCTGGGCCTGACCGGCATGTTGGTGCGATGGTACGAGTCGTACCTGGTCGGCGCAGACATTGGTCACATCCCCATCTC
GAATCTGTACGAGGTGTTCATCCTCTTTACGTTGATCACCTCGCTCTTCTATCTGTACTACGAGCAGCGTTACAAGACGC
GCGCGCTGGGCCCCTTCGTGATGCTGGTGGTGTCGGCGGCGGTGGGCTTTCTGCTGTGGTACACGGTGTCGCGCGGCGCG
CAGGAGATCCAGCCGCTGGTGCCGGCATTGCAGAGCTGGTGGATGAAGATCCACGTACCGGCCAATTTCATCGGCTACGG
CACGTTCGCCCTGTCGGCCATGGTCGGTGCGGCTTATCTGCTGAAGGAGCGGGGCGTGCTGGCCGATCGCCTCCCGTCGC
TCGAAGTGCTGGACGACGTGATGTACAAGGCCATCACCGTCGGCTTTGCATTCTTCACCATCGCCACGATTCTCGGGGCG
CTGTGGGCGGCTGACGCATGGGGCGGCTACTGGAGCTGGGATCCGAAGGAAACCTGGGCGCTGATCGTTTGGCTGAACTA
CGCCGCGTGGCTGCACATGCGCCTGATGAAGGGGCTGCGTGGCCGCATGGCGGCCTGGTGGGCCCTGATTGGCCTCTTGG
TGACGACGTTCGCCTTCCTTGGCGTGAACATGTTCCTCTCGGGCCTGCACAGTTACGGCGAGCTGTAA

Upstream 100 bases:

>100_bases
CGCCTCAAGCACGATATCCGCGCCGCGGCAGGTGCCCAAGCCGCCCCCGATGCCGCCAGTGCAGCGAGCGTCGACCCCAA
ACCAACGAAGTGAGCAGGTG

Downstream 100 bases:

>100_bases
GCCGTCAGTCACAAAAAACTCAGCGGACTGGAATAAAGACGCGCCTAGCGTGTTTACTGCTCAGTGAGGGCGCGATCGGC
GCGCCTCTCCATCCAAGGAG

Product: cytochrome c-type biogenesis protein CcsB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MEATNPQTTVASADLGALKRPSYFRRLGWFDWLFAAMLAAGAGYAFSRYGAYMDGYERGILVAAVPAFAWLGWTWKPVRV
LMIGIAVLSLFGISQYAGANGPDLARAEHAFFLKYFLASQSAILWMSALIFLSTLFFWTGLALRWEAGGAIGSKLCWAAV
VLGLTGMLVRWYESYLVGADIGHIPISNLYEVFILFTLITSLFYLYYEQRYKTRALGPFVMLVVSAAVGFLLWYTVSRGA
QEIQPLVPALQSWWMKIHVPANFIGYGTFALSAMVGAAYLLKERGVLADRLPSLEVLDDVMYKAITVGFAFFTIATILGA
LWAADAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRMAAWWALIGLLVTTFAFLGVNMFLSGLHSYGEL

Sequences:

>Translated_395_residues
MEATNPQTTVASADLGALKRPSYFRRLGWFDWLFAAMLAAGAGYAFSRYGAYMDGYERGILVAAVPAFAWLGWTWKPVRV
LMIGIAVLSLFGISQYAGANGPDLARAEHAFFLKYFLASQSAILWMSALIFLSTLFFWTGLALRWEAGGAIGSKLCWAAV
VLGLTGMLVRWYESYLVGADIGHIPISNLYEVFILFTLITSLFYLYYEQRYKTRALGPFVMLVVSAAVGFLLWYTVSRGA
QEIQPLVPALQSWWMKIHVPANFIGYGTFALSAMVGAAYLLKERGVLADRLPSLEVLDDVMYKAITVGFAFFTIATILGA
LWAADAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRMAAWWALIGLLVTTFAFLGVNMFLSGLHSYGEL
>Mature_395_residues
MEATNPQTTVASADLGALKRPSYFRRLGWFDWLFAAMLAAGAGYAFSRYGAYMDGYERGILVAAVPAFAWLGWTWKPVRV
LMIGIAVLSLFGISQYAGANGPDLARAEHAFFLKYFLASQSAILWMSALIFLSTLFFWTGLALRWEAGGAIGSKLCWAAV
VLGLTGMLVRWYESYLVGADIGHIPISNLYEVFILFTLITSLFYLYYEQRYKTRALGPFVMLVVSAAVGFLLWYTVSRGA
QEIQPLVPALQSWWMKIHVPANFIGYGTFALSAMVGAAYLLKERGVLADRLPSLEVLDDVMYKAITVGFAFFTIATILGA
LWAADAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGRMAAWWALIGLLVTTFAFLGVNMFLSGLHSYGEL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 44077; Mature: 44077

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA