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The map label for this gene is 187930050

Identifier: 187930050

GI number: 187930050

Start: 3107396

End: 3107920

Strand: Reverse

Name: 187930050

Synonym: Rpic_2982

Alternate gene names: NA

Gene position: 3107920-3107396 (Counterclockwise)

Preceding gene: 187930051

Following gene: 187930049

Centisome position: 78.83

GC content: 62.67

Gene sequence:

>525_bases
ATGTCGTTGTCCCGAGGTTTGTCCCGCCGTCGCTTTGGCCGCTCTGTCCTTGCGCTTGCGATTGCGCTGCCGGCGCTGTC
CGCTTGCGGTTTCCACATGCGGGGCAACACCGACTTCGCGTTCAAGCGGCTGTACATCAACTTGCCGCAGAACTCGCAGA
TGCGCGCGCAGTTGCGCCGGCTGATCGACAACGGCTCCGACACCATCATCGTGTCGGATAAGAAAGACGCCGATGCGCTG
CTCGACGTGCTGGCCGAAGACCGCGTGAAGACCATCTCGTCGCTCACGCCGCAGGGTGTGGTGCGCGAGTACCGCATCAC
GTACCGCTTCCGCTTCCAGCTGCGCGATGCGCACGACAACCTGCTGATCCCGCCGTCGGAAATCACGCAGTTCCGCGATC
TCTCGTACAACGAGACACAGGTGCTCGCCAAGGACTACGAAGAAGCGGCGCTCTACCGGGACATGCAGGGCGATACGATC
AACCAGCTCGTACGGCGCCTGGGCGCCGTGAAACTGCCGTCGTAA

Upstream 100 bases:

>100_bases
ATTTGCTGAAGGCAAGCCGCCCAAGAAGATCATCGTGGTGCCGGGCCGTCTGGTGAACGTGGTGGCCTGATCGGCCATCC
CACTCAAGGAACGCATGGTT

Downstream 100 bases:

>100_bases
GCGGCAGATCAGGGCAAGGTTTCCCATGCAATTGCGGCTCGACGCGCTCGAAGGTCATCTGAAGCAGGCCACTGCCAAGG
GGCTCGCGCCGCTGTACGTG

Product: Rare lipoprotein B

Products: NA

Alternate protein names: Lipoprotein; Lipoprotein B; Lipoprotein B Transmembrane; Lipoprotein B Transmembrane; Lipoprotein B Transmembrane Protein

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSLSRGLSRRRFGRSVLALAIALPALSACGFHMRGNTDFAFKRLYINLPQNSQMRAQLRRLIDNGSDTIIVSDKKDADAL
LDVLAEDRVKTISSLTPQGVVREYRITYRFRFQLRDAHDNLLIPPSEITQFRDLSYNETQVLAKDYEEAALYRDMQGDTI
NQLVRRLGAVKLPS

Sequences:

>Translated_174_residues
MSLSRGLSRRRFGRSVLALAIALPALSACGFHMRGNTDFAFKRLYINLPQNSQMRAQLRRLIDNGSDTIIVSDKKDADAL
LDVLAEDRVKTISSLTPQGVVREYRITYRFRFQLRDAHDNLLIPPSEITQFRDLSYNETQVLAKDYEEAALYRDMQGDTI
NQLVRRLGAVKLPS
>Mature_173_residues
SLSRGLSRRRFGRSVLALAIALPALSACGFHMRGNTDFAFKRLYINLPQNSQMRAQLRRLIDNGSDTIIVSDKKDADALL
DVLAEDRVKTISSLTPQGVVREYRITYRFRFQLRDAHDNLLIPPSEITQFRDLSYNETQVLAKDYEEAALYRDMQGDTIN
QLVRRLGAVKLPS

Specific function: Unknown

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19833; Mature: 19702

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSRGLSRRRFGRSVLALAIALPALSACGFHMRGNTDFAFKRLYINLPQNSQMRAQLRR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHH
LIDNGSDTIIVSDKKDADALLDVLAEDRVKTISSLTPQGVVREYRITYRFRFQLRDAHDN
HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEEEEEEEECCCCC
LLIPPSEITQFRDLSYNETQVLAKDYEEAALYRDMQGDTINQLVRRLGAVKLPS
EEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLSRGLSRRRFGRSVLALAIALPALSACGFHMRGNTDFAFKRLYINLPQNSQMRAQLRR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHH
LIDNGSDTIIVSDKKDADALLDVLAEDRVKTISSLTPQGVVREYRITYRFRFQLRDAHDN
HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEEEEEEEECCCCC
LLIPPSEITQFRDLSYNETQVLAKDYEEAALYRDMQGDTINQLVRRLGAVKLPS
EEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA