Click here to switch to the map view.

The map label for this gene is 187930019

Identifier: 187930019

GI number: 187930019

Start: 3070466

End: 3071914

Strand: Reverse

Name: 187930019

Synonym: Rpic_2951

Alternate gene names: NA

Gene position: 3071914-3070466 (Counterclockwise)

Preceding gene: 187930021

Following gene: 187930018

Centisome position: 77.92

GC content: 63.91

Gene sequence:

>1449_bases
ATGCTGTTTTTCTCGATGCTGCAGTACGCTTGGGTTGCAGTGCGTCCGCTCGTTCTGGTGCGCGCTGCTGCTCTGCGTCC
CCTCCGTCGTCCGGCCTTGCTGGCTGCGATGGCTTTGTTCTCTGCTTTCACGCATGCTGCCCAAGCGCAAGAAGCTCCGG
CTTCTGCTCCGGCTGCAGATGCGCTGCCTGCCGGTGGTGAGTTGGGCGACCGCTTCGGCTTCCATGGCCAATCGACGTGG
GTCTGGCAAGCCAAGCCCGCCTTCAAGTCGCCGTACAGCGGCGACAACAGCCTGACGGCGGGCCGCGCCACGAGTTATTC
CTTCAGCACGACGCTGGACCTGGGCATGCGGCTGTGGAAGGGCGCGGAATTCCACTTCAACCCGGAAGTGGTGATGGGCA
AGGCGTTCTCCGATCTGCATGGCCTGGGTGGCCCCACCAACGGCGAGTTGGCCAAGGTCACGGGCACTGACCCGACGCTG
TACCGCGCCCGCGTTTTCATGCGTCAGACCTGGGGCCTGGGCGGTGACACAGAAAAGGTCGACGCCGACTTCAACCAGTT
CGCTGACGTGGTCGACAAGCGTCGCGTGGTGCTGACCGCGGGCAATCTGCCGGTGCTCGATGTCTTTGATGCCGTGGAGT
ACGCGCACGACCCGCGCACGCAGTTCCTGAACTGGTCGTTCATGACGCACCCGTCGTTCGACTATGCGGCCGATGCGCGC
GGCTACAGCTGGGGCGTTGCGCTGGAGTACATCGACAGCGAGCTGGGCTGGGCCGTCCGCGCGGGCCGATTCCTGCAACC
GCTTGAGTCCAACGGCTTGCCGCTCGACACGCGTTTTCTGAAGCACTACGGCGACATGCTGGAGCTTGAAAAGCGCTACA
CGCTGTTCGGCCAGGAGGGCAAGGTGCGCTTGCTGGGCTGGCGCAACTTCGCGCGCATGGGCCGCTTTGATGATGCGATT
GCGCTCGGGCAGGCCACCGGTGCCGCGCCAGACCTGAGCCAGGTGCGGCGCGAGCACGCCAAGGTGGGCGTCGGCCTGTC
GTTCGAGCAGAAAGTGGGCGAAAACCTGGGCCTGTTCACCCGCCTGAACTGGTCGGATGACAAGACCGAGACCTATGCTT
TTACCGAGGTGGGCCGCAACGTGTCGTTCGGCGGTCTGCTCAAGGGCACGTCCTGGGGGCGGCCGAATGATGTGTTGGGG
GCGGCCTTTTCGCTCAACATGCTGGGCCCGGATCATCGTGCCTATCTGGCGGCGGGCGGCAGCGGCGCCTTCCTGGGTGA
CGGCGCACTGAACTATGGCCACGAGCGCATACTCGAAGTGTTCTACAGCTTTCAACCGGTCAAGGGCATCACGCTCAGCC
CCGATTTTCAGTTGATCCAGAACCCCGGTTACAACCGGGACCGCGGGCCTGCCAAGTTCTTTGGCATTCGTGCCCACGCG
GAGTTCTAA

Upstream 100 bases:

>100_bases
ACGGCCATGTGGCCGCGTACGCGTTTGCGTGCGTGGTTCCTGGGAGGCTCGTGGTCGGCCCATGCCTACGTCTGTCATAG
AAGCAGACGAGGGAGGTCTC

Downstream 100 bases:

>100_bases
CGCCTACGGAGGACCCATATGGACAGTCCGAGTCGACCTTATCCGACAACCACATCAGTTTCCCACTAGGCCAGTCCGCC
GCACGGTTTTCCCTGCTGCT

Product: Carbohydrate-selective porin OprB

Products: NA

Alternate protein names: OmpA-Like Transmembrane Domain-Containing Protein; Carbohydrate-Selective Porin Oprb; OmpA-Like Transmembrane Domain Protein; OmpA Domain-Containing Protein; Outer Membrane Protein A-Like; Carbohydrate-Selective Porin

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MLFFSMLQYAWVAVRPLVLVRAAALRPLRRPALLAAMALFSAFTHAAQAQEAPASAPAADALPAGGELGDRFGFHGQSTW
VWQAKPAFKSPYSGDNSLTAGRATSYSFSTTLDLGMRLWKGAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTL
YRARVFMRQTWGLGGDTEKVDADFNQFADVVDKRRVVLTAGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
GYSWGVALEYIDSELGWAVRAGRFLQPLESNGLPLDTRFLKHYGDMLELEKRYTLFGQEGKVRLLGWRNFARMGRFDDAI
ALGQATGAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFTRLNWSDDKTETYAFTEVGRNVSFGGLLKGTSWGRPNDVLG
AAFSLNMLGPDHRAYLAAGGSGAFLGDGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHA
EF

Sequences:

>Translated_482_residues
MLFFSMLQYAWVAVRPLVLVRAAALRPLRRPALLAAMALFSAFTHAAQAQEAPASAPAADALPAGGELGDRFGFHGQSTW
VWQAKPAFKSPYSGDNSLTAGRATSYSFSTTLDLGMRLWKGAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTL
YRARVFMRQTWGLGGDTEKVDADFNQFADVVDKRRVVLTAGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
GYSWGVALEYIDSELGWAVRAGRFLQPLESNGLPLDTRFLKHYGDMLELEKRYTLFGQEGKVRLLGWRNFARMGRFDDAI
ALGQATGAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFTRLNWSDDKTETYAFTEVGRNVSFGGLLKGTSWGRPNDVLG
AAFSLNMLGPDHRAYLAAGGSGAFLGDGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHA
EF
>Mature_482_residues
MLFFSMLQYAWVAVRPLVLVRAAALRPLRRPALLAAMALFSAFTHAAQAQEAPASAPAADALPAGGELGDRFGFHGQSTW
VWQAKPAFKSPYSGDNSLTAGRATSYSFSTTLDLGMRLWKGAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTL
YRARVFMRQTWGLGGDTEKVDADFNQFADVVDKRRVVLTAGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
GYSWGVALEYIDSELGWAVRAGRFLQPLESNGLPLDTRFLKHYGDMLELEKRYTLFGQEGKVRLLGWRNFARMGRFDDAI
ALGQATGAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFTRLNWSDDKTETYAFTEVGRNVSFGGLLKGTSWGRPNDVLG
AAFSLNMLGPDHRAYLAAGGSGAFLGDGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHA
EF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53022; Mature: 53022

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFFSMLQYAWVAVRPLVLVRAAALRPLRRPALLAAMALFSAFTHAAQAQEAPASAPAAD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ALPAGGELGDRFGFHGQSTWVWQAKPAFKSPYSGDNSLTAGRATSYSFSTTLDLGMRLWK
CCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHC
GAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTLYRARVFMRQTWGLGGDTEKV
CCCEEECCCEEECCHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC
DADFNQFADVVDKRRVVLTAGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
CCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCHHEEEEEEEECCCCCCCCCCC
GYSWGVALEYIDSELGWAVRAGRFLQPLESNGLPLDTRFLKHYGDMLELEKRYTLFGQEG
CCEEEEEHEEHHHHHHHHHHCCHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCCC
KVRLLGWRNFARMGRFDDAIALGQATGAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFT
CEEEEECHHHHHCCCCCCHHEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCEEE
RLNWSDDKTETYAFTEVGRNVSFGGLLKGTSWGRPNDVLGAAFSLNMLGPDHRAYLAAGG
EECCCCCCCCEEEHHHHCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCEEEEECC
SGAFLGDGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHA
CCCEECCCCHHHHHHHHHHHHHHCCCCCCCEECCCHHEECCCCCCCCCCCCEEEEEEEEC
EF
CC
>Mature Secondary Structure
MLFFSMLQYAWVAVRPLVLVRAAALRPLRRPALLAAMALFSAFTHAAQAQEAPASAPAAD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ALPAGGELGDRFGFHGQSTWVWQAKPAFKSPYSGDNSLTAGRATSYSFSTTLDLGMRLWK
CCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHC
GAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTLYRARVFMRQTWGLGGDTEKV
CCCEEECCCEEECCHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC
DADFNQFADVVDKRRVVLTAGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
CCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCHHEEEEEEEECCCCCCCCCCC
GYSWGVALEYIDSELGWAVRAGRFLQPLESNGLPLDTRFLKHYGDMLELEKRYTLFGQEG
CCEEEEEHEEHHHHHHHHHHCCHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCCC
KVRLLGWRNFARMGRFDDAIALGQATGAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFT
CEEEEECHHHHHCCCCCCHHEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCEEE
RLNWSDDKTETYAFTEVGRNVSFGGLLKGTSWGRPNDVLGAAFSLNMLGPDHRAYLAAGG
EECCCCCCCCEEEHHHHCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCEEEEECC
SGAFLGDGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHA
CCCEECCCCHHHHHHHHHHHHHHCCCCCCCEECCCHHEECCCCCCCCCCCCEEEEEEEEC
EF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA