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The map label for this gene is rhaR [C]

Identifier: 187929892

GI number: 187929892

Start: 2931323

End: 2932339

Strand: Reverse

Name: rhaR [C]

Synonym: Rpic_2824

Alternate gene names: 187929892

Gene position: 2932339-2931323 (Counterclockwise)

Preceding gene: 187929894

Following gene: 187929885

Centisome position: 74.38

GC content: 67.06

Gene sequence:

>1017_bases
ATGCCGAAAATCGACCTGCTGACCTTTCCCGACGCGGGCTTTTCCACACTGGCAACGGCTGCCGACACGCTTGGCGTGGC
CAATGCGCTGGCTTCCATGCAGGCCGGCAAGCGCGCCAATGCCGCCAAGACGCCGATGTTCGGCTGGCGACTCATCGCGC
GGGACCCGGCGCATTGGCAGGCTGCGGCACAAACGCTCGCTTGCCGTTGTGATGCACTACCGGATGACGACGCGCAGCTC
GGTGATGCGTTGATTGTCCCGCCCGTGCATTTCGACCACATTGGCACGCTGGAACAGCGCCTGGCTCTCCTGGAAGTGGA
GCGCGCCACCATCCGCCGTTATCTGCAGGCCGGGCGGTTGGTGGCGTCGCCGTTCACGGGTGTGGCGATGCTGGCTGACG
TGCTGCCGCCCGGGCAGCGCCTGACCGTCACGTGGCTGATTGCCGGGTGGGTGCAGGGCAATTTCCCCAGCCTGAAGGTG
GTGCCTGCACAGGCGATTGTCAGCAGCGGCAACGTCATCACCGCACGGGCGATGGAGCATGGCGTGGCGCTCACGCACCG
CTTAGTCGCGCGATTGGCGGATGCGCGGCTCGCGCGCACGCTGGGCAATACGGCGCTCGATCACCCCTCGCGCGGCGAGG
CGATCGGCATCTGGCTGCGCAGCAAGCCGGCCATCCGCGACAGCGTCGTGCTGCGCGCGCGGCGTTACCTGCAGCAGCAT
CTGCACGACCCGTTTGATCTGGAAAAACTCGCAGCCGCCGCCTCGACCAGCGAGCGGACGCTGCTGCGGCATTTCGCGAA
AACGGTGGGGATGTCGCCGCTGCAATTGCTGCACCGGTTGCGCGTGGAGCGCGCGTGTCACTTGCTCGAAGTCAGCACGC
TGAGCCTGACGGCGATTGCCGAGCAGTGCGGCTATCAGGACATGTCCGCCTTCCGGCGGTTGATCCGGCGGCACACGGGG
CGGCCGCCGGGGGCACATCGGCGCGCGCATTCGGTGCGCGCCGAACTGCGAAATTAA

Upstream 100 bases:

>100_bases
TCGCATCGTCAATCGGGCGCGTCTGATTCGAAAGAGGTATTCCCGCCAGAATTGGGGTCAATATCGCCACGGGAATTGCC
GCACACGCCTATACTCGGGC

Downstream 100 bases:

>100_bases
GCGGCTTTCTTCTTCTCGCCGATGCGGCTTTCCTTGCCGGCCAGCAGCTTGGCGATATTGGCCCGGTGGCGCGCGATAAG
CAGCACCGCCATCAGCGCAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator AraC Family; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; Transcriptional Activator FtrA; Helix-Turn-Helix Domain-Containing Protein; ThiJ/PfpI Domain-Containing Protein; ADPA Family Transcriptional Regulator; Transcriptional Regulator Arac Family; A-Factor-Responsive Transcriptional Activator; AraC Family Regulatory Helix-Turn-Helix Protein; ADPA-Family Transcriptional Regulator; DJ-1/PfpI Family; AraC Family Regulatory Protein; Transcriptional Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Helix-Turn-Helix Domain-Containing Protein AraC Type; Arac Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcription Regulator; AraC-Family Protein Transcriptional Regulator; AraC Family Transcription Regulator Protein; DJ-1/PfpI Family Protein

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MPKIDLLTFPDAGFSTLATAADTLGVANALASMQAGKRANAAKTPMFGWRLIARDPAHWQAAAQTLACRCDALPDDDAQL
GDALIVPPVHFDHIGTLEQRLALLEVERATIRRYLQAGRLVASPFTGVAMLADVLPPGQRLTVTWLIAGWVQGNFPSLKV
VPAQAIVSSGNVITARAMEHGVALTHRLVARLADARLARTLGNTALDHPSRGEAIGIWLRSKPAIRDSVVLRARRYLQQH
LHDPFDLEKLAAAASTSERTLLRHFAKTVGMSPLQLLHRLRVERACHLLEVSTLSLTAIAEQCGYQDMSAFRRLIRRHTG
RPPGAHRRAHSVRAELRN

Sequences:

>Translated_338_residues
MPKIDLLTFPDAGFSTLATAADTLGVANALASMQAGKRANAAKTPMFGWRLIARDPAHWQAAAQTLACRCDALPDDDAQL
GDALIVPPVHFDHIGTLEQRLALLEVERATIRRYLQAGRLVASPFTGVAMLADVLPPGQRLTVTWLIAGWVQGNFPSLKV
VPAQAIVSSGNVITARAMEHGVALTHRLVARLADARLARTLGNTALDHPSRGEAIGIWLRSKPAIRDSVVLRARRYLQQH
LHDPFDLEKLAAAASTSERTLLRHFAKTVGMSPLQLLHRLRVERACHLLEVSTLSLTAIAEQCGYQDMSAFRRLIRRHTG
RPPGAHRRAHSVRAELRN
>Mature_337_residues
PKIDLLTFPDAGFSTLATAADTLGVANALASMQAGKRANAAKTPMFGWRLIARDPAHWQAAAQTLACRCDALPDDDAQLG
DALIVPPVHFDHIGTLEQRLALLEVERATIRRYLQAGRLVASPFTGVAMLADVLPPGQRLTVTWLIAGWVQGNFPSLKVV
PAQAIVSSGNVITARAMEHGVALTHRLVARLADARLARTLGNTALDHPSRGEAIGIWLRSKPAIRDSVVLRARRYLQQHL
HDPFDLEKLAAAASTSERTLLRHFAKTVGMSPLQLLHRLRVERACHLLEVSTLSLTAIAEQCGYQDMSAFRRLIRRHTGR
PPGAHRRAHSVRAELRN

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI171474011, Length=93, Percent_Identity=36.5591397849462, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36980; Mature: 36849

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKIDLLTFPDAGFSTLATAADTLGVANALASMQAGKRANAAKTPMFGWRLIARDPAHWQ
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHH
AAAQTLACRCDALPDDDAQLGDALIVPPVHFDHIGTLEQRLALLEVERATIRRYLQAGRL
HHHHHHHHHCCCCCCCCHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VASPFTGVAMLADVLPPGQRLTVTWLIAGWVQGNFPSLKVVPAQAIVSSGNVITARAMEH
HHCCCHHHHHHHHHCCCCCEEEEEEEEEEHHCCCCCCEEEECHHHHHCCCCEEEEHHHHH
GVALTHRLVARLADARLARTLGNTALDHPSRGEAIGIWLRSKPAIRDSVVLRARRYLQQH
HHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
LHDPFDLEKLAAAASTSERTLLRHFAKTVGMSPLQLLHRLRVERACHLLEVSTLSLTAIA
CCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQCGYQDMSAFRRLIRRHTGRPPGAHRRAHSVRAELRN
HHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PKIDLLTFPDAGFSTLATAADTLGVANALASMQAGKRANAAKTPMFGWRLIARDPAHWQ
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHH
AAAQTLACRCDALPDDDAQLGDALIVPPVHFDHIGTLEQRLALLEVERATIRRYLQAGRL
HHHHHHHHHCCCCCCCCHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VASPFTGVAMLADVLPPGQRLTVTWLIAGWVQGNFPSLKVVPAQAIVSSGNVITARAMEH
HHCCCHHHHHHHHHCCCCCEEEEEEEEEEHHCCCCCCEEEECHHHHHCCCCEEEEHHHHH
GVALTHRLVARLADARLARTLGNTALDHPSRGEAIGIWLRSKPAIRDSVVLRARRYLQQH
HHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
LHDPFDLEKLAAAASTSERTLLRHFAKTVGMSPLQLLHRLRVERACHLLEVSTLSLTAIA
CCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQCGYQDMSAFRRLIRRHTGRPPGAHRRAHSVRAELRN
HHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA