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The map label for this gene is yfdE [H]

Identifier: 187929702

GI number: 187929702

Start: 2745171

End: 2746220

Strand: Reverse

Name: yfdE [H]

Synonym: Rpic_2631

Alternate gene names: 187929702

Gene position: 2746220-2745171 (Counterclockwise)

Preceding gene: 187929703

Following gene: 187929701

Centisome position: 69.66

GC content: 68.86

Gene sequence:

>1050_bases
ATGCCGCACACGCTGCAGTTGCCTCTGCACGGCGTCCGTGTGGTGGAGTTTGAGGGCATCGGTCCAGGCCCTCTGGCCGC
CAGGATGCTGGTCGACATGGGCGCCGAGGTGATCGCGCTGGCACGGGCCGAGCAGGCTGCTGGGGCGCAGCGGCTGGGCG
GGGCGGTGGAGAACCCGCTGCACCGCGGCAAGAAGGTCGAGGTCATCGACCTGAAGTCGCCCGGTGGCAAGGCGCGCGCA
CTGGAACTGATTGCCCAGGCCGACGCTCTGATCGAAGGCTTTCGCCCAAGGGTGATGGAGCGGCTGGGCTTCGGCCCCGC
AGATTGCGCGGCGCTCAATCCCCGGCTGGTCTATGGCCGGATGACGGGCTGGGGCCAGGACGGGCCACTTGCCCAGGCCG
CGGGCCACGACCTGAACTACGTCGCGCTGACAGGCCTGCTGTCGCTGTCGGCGCACAGGGGGCAGGCGCCCATCGTGCCG
CCCTCGGTACTCGGGGATGGGGCCGGGGCGCTGGGCATGGCCTTCGGCGTCGCCTGCGCGCTGGTCGATGCGCGCGCCAC
CGGCCACGGCCGGGTCGTGGACGCCGCGATCATTGACATCGTGGCCATGCTGGGCACGCTGGTGCATTGGATTCGCGCCA
ATGGGCAAATTGACGGCGCGCAGCCGAGCCCGTTTCACGATTCGCCGTTCTATGACGTATACGCTTGCGCTGACGGCGGC
TTCATCAGCCTCGCAGCAGTGGAGCCAGCGTTCCACGCGCTTCTGCTGTCGAAGCTGGGCCTTGCTGACGTGAACCCCGC
CGAGCAGTACGACGCGGCGACGTGGCCAGCGCTGAAAGAGCGGATCGCAGCCTTTATCCGCAGCCAACCCAGGGCGCACT
GGTGCGCGCTGCTCGAAGGCAGCGACGCCTGCTTTGCGCCCGTGCTCAGCCTCGCCGAGGCGGTGCGGCATCCGCATAAC
GCAGCACGGGGCATTTACCAGATCACCCCATCCGGCGCCATCGAAGCGGCCCCGGCCCCACGGTTCCAGGCACTCGACAC
AACTACCTAG

Upstream 100 bases:

>100_bases
AGTATCCGATCGCGCGGATGTATGCCGCTTCGCGAGTGCAGAAGATCTACGGCGGCGCCAACGAGGTCCTGAAAGACCTG
GTTTCGAGGAAGCTGTGAAC

Downstream 100 bases:

>100_bases
GAGACAAGCACATGACCGACACCATCCAGCCCACCAAGCCTGTCCGCGGCTGCCCGTCCACCACGGGCAACGAGCGCCAA
CTGAACACCACAACGCTGAT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MPHTLQLPLHGVRVVEFEGIGPGPLAARMLVDMGAEVIALARAEQAAGAQRLGGAVENPLHRGKKVEVIDLKSPGGKARA
LELIAQADALIEGFRPRVMERLGFGPADCAALNPRLVYGRMTGWGQDGPLAQAAGHDLNYVALTGLLSLSAHRGQAPIVP
PSVLGDGAGALGMAFGVACALVDARATGHGRVVDAAIIDIVAMLGTLVHWIRANGQIDGAQPSPFHDSPFYDVYACADGG
FISLAAVEPAFHALLLSKLGLADVNPAEQYDAATWPALKERIAAFIRSQPRAHWCALLEGSDACFAPVLSLAEAVRHPHN
AARGIYQITPSGAIEAAPAPRFQALDTTT

Sequences:

>Translated_349_residues
MPHTLQLPLHGVRVVEFEGIGPGPLAARMLVDMGAEVIALARAEQAAGAQRLGGAVENPLHRGKKVEVIDLKSPGGKARA
LELIAQADALIEGFRPRVMERLGFGPADCAALNPRLVYGRMTGWGQDGPLAQAAGHDLNYVALTGLLSLSAHRGQAPIVP
PSVLGDGAGALGMAFGVACALVDARATGHGRVVDAAIIDIVAMLGTLVHWIRANGQIDGAQPSPFHDSPFYDVYACADGG
FISLAAVEPAFHALLLSKLGLADVNPAEQYDAATWPALKERIAAFIRSQPRAHWCALLEGSDACFAPVLSLAEAVRHPHN
AARGIYQITPSGAIEAAPAPRFQALDTTT
>Mature_348_residues
PHTLQLPLHGVRVVEFEGIGPGPLAARMLVDMGAEVIALARAEQAAGAQRLGGAVENPLHRGKKVEVIDLKSPGGKARAL
ELIAQADALIEGFRPRVMERLGFGPADCAALNPRLVYGRMTGWGQDGPLAQAAGHDLNYVALTGLLSLSAHRGQAPIVPP
SVLGDGAGALGMAFGVACALVDARATGHGRVVDAAIIDIVAMLGTLVHWIRANGQIDGAQPSPFHDSPFYDVYACADGGF
ISLAAVEPAFHALLLSKLGLADVNPAEQYDAATWPALKERIAAFIRSQPRAHWCALLEGSDACFAPVLSLAEAVRHPHNA
ARGIYQITPSGAIEAAPAPRFQALDTTT

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=344, Percent_Identity=37.7906976744186, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI266456254, Length=344, Percent_Identity=37.7906976744186, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI266458393, Length=301, Percent_Identity=36.2126245847176, Blast_Score=176, Evalue=2e-44,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=39.0804597701149, Blast_Score=171, Evalue=8e-43,
Organism=Homo sapiens, GI266458395, Length=139, Percent_Identity=43.1654676258993, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI42822893, Length=139, Percent_Identity=43.1654676258993, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI300863124, Length=340, Percent_Identity=25.2941176470588, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI300863128, Length=334, Percent_Identity=24.8502994011976, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI300863126, Length=150, Percent_Identity=30.6666666666667, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI87082093, Length=332, Percent_Identity=26.8072289156627, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788717, Length=207, Percent_Identity=27.0531400966184, Blast_Score=81, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=355, Percent_Identity=30.4225352112676, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI115535051, Length=347, Percent_Identity=28.8184438040346, Blast_Score=154, Evalue=5e-38,
Organism=Drosophila melanogaster, GI24585488, Length=349, Percent_Identity=39.2550143266476, Blast_Score=225, Evalue=3e-59,
Organism=Drosophila melanogaster, GI24648431, Length=335, Percent_Identity=24.4776119402985, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 36453; Mature: 36322

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00082 EXTRADIOL_DIOXYGENAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHTLQLPLHGVRVVEFEGIGPGPLAARMLVDMGAEVIALARAEQAAGAQRLGGAVENPL
CCCEEECCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCHHHHHH
HRGKKVEVIDLKSPGGKARALELIAQADALIEGFRPRVMERLGFGPADCAALNPRLVYGR
HCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHCCCEEEEEE
MTGWGQDGPLAQAAGHDLNYVALTGLLSLSAHRGQAPIVPPSVLGDGAGALGMAFGVACA
CCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHH
LVDARATGHGRVVDAAIIDIVAMLGTLVHWIRANGQIDGAQPSPFHDSPFYDVYACADGG
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC
FISLAAVEPAFHALLLSKLGLADVNPAEQYDAATWPALKERIAAFIRSQPRAHWCALLEG
EEEEEEHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
SDACFAPVLSLAEAVRHPHNAARGIYQITPSGAIEAAPAPRFQALDTTT
CCHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCEECCCCCCCCCCCCCC
>Mature Secondary Structure 
PHTLQLPLHGVRVVEFEGIGPGPLAARMLVDMGAEVIALARAEQAAGAQRLGGAVENPL
CCEEECCCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCHHHHHH
HRGKKVEVIDLKSPGGKARALELIAQADALIEGFRPRVMERLGFGPADCAALNPRLVYGR
HCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHCCCEEEEEE
MTGWGQDGPLAQAAGHDLNYVALTGLLSLSAHRGQAPIVPPSVLGDGAGALGMAFGVACA
CCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHH
LVDARATGHGRVVDAAIIDIVAMLGTLVHWIRANGQIDGAQPSPFHDSPFYDVYACADGG
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCC
FISLAAVEPAFHALLLSKLGLADVNPAEQYDAATWPALKERIAAFIRSQPRAHWCALLEG
EEEEEEHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
SDACFAPVLSLAEAVRHPHNAARGIYQITPSGAIEAAPAPRFQALDTTT
CCHHHHHHHHHHHHHHCCCHHHCCEEEECCCCCEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]