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The map label for this gene is yggW [C]

Identifier: 187929361

GI number: 187929361

Start: 2401708

End: 2402976

Strand: Direct

Name: yggW [C]

Synonym: Rpic_2282

Alternate gene names: 187929361

Gene position: 2401708-2402976 (Clockwise)

Preceding gene: 187929360

Following gene: 187929362

Centisome position: 60.92

GC content: 64.46

Gene sequence:

>1269_bases
ATGATCCCGATTTACCCCGCCGGCGCAGCCAAGACGCCTGCCGCGACTGCCGCTGAGACCGGTGACAAGGTCACCTCCGT
CTTCCTGCAGCCGGGCAAGATCAACTTGCCCGCTTCGCCGCCGCTGTCCTTGTACGTGCACGTGCCGTGGTGCGTACGCA
AGTGTCCGTACTGCGATTTCAACTCGCATGCGGAGCCGGAACAGGGCATCCCGGAAGAGCGCTTTCTGGCTGCCGTGCGG
CAAGACCTGGAAGCCGCGCTGCCGATGGTGTGGGGCCGGCATGTGCACACGATCTTCATCGGGGGCGGTACGCCGAGCTT
GTTGTCGGCGCAAGGGCTGGACCGCTTGCTGTCGGACATCCGCATGCTGCTGCCAGTTGACGCCGACGCCGAGATCACGA
TGGAGGCCAACCCGGGCACGTTCGAGGCAGAACGCTTCCGTAGCTACCGCGCCAGCGGCGTGAACCGCCTGTCGATCGGC
ATCCAGAGCTTCAACGACGCATACCTGCAGGCGCTAGGCCGCATCCACAGCGCCGCTGAAGCGCGCGCCGCCATCGACAT
GGCCCGCGCGCATTTCGACAACATCAACCTCGACCTGATGTTCGCGCTGCCGGGCCAGACACTTGCCGAGTGCGAGGCCG
ATGTTGAGGCCGCGTTGTCGTTCGATACGAATCACGTGTCGCTGTACCACCTGACGCTGGAGCCGAACACCTACTTCGCC
AAGTACCCGCCCGCGCTGCCGGATGACGACGCGGCGTTTGCAATGCAGGACTGGATTCACGCGCGGTTGGCAGCGGCAGG
CTACGAGCACTACGAGGTGTCGGCATACGCCAAGGCCGGCAAGCGCTGCAAGCACAACCTGAACTACTGGCAATTCGGCG
ATTACCTCGGCATTGGCCCGGGCGCACACGGCAAGCTCAGTTTTCCGCACCGGGTCATCCGCGAGATGCGGCACAAGCAT
CCGGACACGTATCTGCGCCAGGCCGAGACTGCGGGCGGTGCGGCCGTCATGCAGGAGCAGCGCGAAGTCGACGCTGCCGA
CCTGCCGTTCGAGTTCATGCTCAATGCGCTGCGACTGACGGACGGTTTTCCCGTCACGCTGTTCCAGGAACGCACGGGCC
TGCCGCTGCGCTCCATTGAGCGACAACTCGACGCCGCCGAGCAGCGCGGCCTGCTGACGCGCGACCATGTCGCCATCCGC
CCGACCGAACTGGGACAGCGATTCCTCAACGATTTGCAGGAATTGTTCTTGGCCGACGACGAAAACTGA

Upstream 100 bases:

>100_bases
GAACTGACCAAGGCCGAGAAGAACAGCGTGAGCCATCGTGCACAAGCCCTCGCGCAGCTCGTCGAACGGCTGCGCACCTT
TGAAAACGCCTGACGTTCCG

Downstream 100 bases:

>100_bases
CGGTACCCGGTGCCAAGTTGCGCCAGGTACCGTTACAATGGCGCCCTTGCTCGCAACGAGCAGCGCAGTACGAAGGAAGC
GTGGCCGAGTGGTTTAAGGC

Product: coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MIPIYPAGAAKTPAATAAETGDKVTSVFLQPGKINLPASPPLSLYVHVPWCVRKCPYCDFNSHAEPEQGIPEERFLAAVR
QDLEAALPMVWGRHVHTIFIGGGTPSLLSAQGLDRLLSDIRMLLPVDADAEITMEANPGTFEAERFRSYRASGVNRLSIG
IQSFNDAYLQALGRIHSAAEARAAIDMARAHFDNINLDLMFALPGQTLAECEADVEAALSFDTNHVSLYHLTLEPNTYFA
KYPPALPDDDAAFAMQDWIHARLAAAGYEHYEVSAYAKAGKRCKHNLNYWQFGDYLGIGPGAHGKLSFPHRVIREMRHKH
PDTYLRQAETAGGAAVMQEQREVDAADLPFEFMLNALRLTDGFPVTLFQERTGLPLRSIERQLDAAEQRGLLTRDHVAIR
PTELGQRFLNDLQELFLADDEN

Sequences:

>Translated_422_residues
MIPIYPAGAAKTPAATAAETGDKVTSVFLQPGKINLPASPPLSLYVHVPWCVRKCPYCDFNSHAEPEQGIPEERFLAAVR
QDLEAALPMVWGRHVHTIFIGGGTPSLLSAQGLDRLLSDIRMLLPVDADAEITMEANPGTFEAERFRSYRASGVNRLSIG
IQSFNDAYLQALGRIHSAAEARAAIDMARAHFDNINLDLMFALPGQTLAECEADVEAALSFDTNHVSLYHLTLEPNTYFA
KYPPALPDDDAAFAMQDWIHARLAAAGYEHYEVSAYAKAGKRCKHNLNYWQFGDYLGIGPGAHGKLSFPHRVIREMRHKH
PDTYLRQAETAGGAAVMQEQREVDAADLPFEFMLNALRLTDGFPVTLFQERTGLPLRSIERQLDAAEQRGLLTRDHVAIR
PTELGQRFLNDLQELFLADDEN
>Mature_422_residues
MIPIYPAGAAKTPAATAAETGDKVTSVFLQPGKINLPASPPLSLYVHVPWCVRKCPYCDFNSHAEPEQGIPEERFLAAVR
QDLEAALPMVWGRHVHTIFIGGGTPSLLSAQGLDRLLSDIRMLLPVDADAEITMEANPGTFEAERFRSYRASGVNRLSIG
IQSFNDAYLQALGRIHSAAEARAAIDMARAHFDNINLDLMFALPGQTLAECEADVEAALSFDTNHVSLYHLTLEPNTYFA
KYPPALPDDDAAFAMQDWIHARLAAAGYEHYEVSAYAKAGKRCKHNLNYWQFGDYLGIGPGAHGKLSFPHRVIREMRHKH
PDTYLRQAETAGGAAVMQEQREVDAADLPFEFMLNALRLTDGFPVTLFQERTGLPLRSIERQLDAAEQRGLLTRDHVAIR
PTELGQRFLNDLQELFLADDEN

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=305, Percent_Identity=37.7049180327869, Blast_Score=182, Evalue=4e-46,
Organism=Escherichia coli, GI1789325, Length=382, Percent_Identity=49.738219895288, Blast_Score=368, Evalue=1e-103,
Organism=Escherichia coli, GI87082341, Length=242, Percent_Identity=29.3388429752066, Blast_Score=115, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 46808; Mature: 46808

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPIYPAGAAKTPAATAAETGDKVTSVFLQPGKINLPASPPLSLYVHVPWCVRKCPYCDF
CCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCEECCCCCCCCEEEEECCHHHHHCCCCCC
NSHAEPEQGIPEERFLAAVRQDLEAALPMVWGRHVHTIFIGGGTPSLLSAQGLDRLLSDI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHH
RMLLPVDADAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAYLQALGRIHSAAE
HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
ARAAIDMARAHFDNINLDLMFALPGQTLAECEADVEAALSFDTNHVSLYHLTLEPNTYFA
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHEEECCCEEEEEEEEECCCCEEE
KYPPALPDDDAAFAMQDWIHARLAAAGYEHYEVSAYAKAGKRCKHNLNYWQFGDYLGIGP
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCEECCCCCCCCC
GAHGKLSFPHRVIREMRHKHPDTYLRQAETAGGAAVMQEQREVDAADLPFEFMLNALRLT
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHC
DGFPVTLFQERTGLPLRSIERQLDAAEQRGLLTRDHVAIRPTELGQRFLNDLQELFLADD
CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCC
EN
CC
>Mature Secondary Structure
MIPIYPAGAAKTPAATAAETGDKVTSVFLQPGKINLPASPPLSLYVHVPWCVRKCPYCDF
CCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCEECCCCCCCCEEEEECCHHHHHCCCCCC
NSHAEPEQGIPEERFLAAVRQDLEAALPMVWGRHVHTIFIGGGTPSLLSAQGLDRLLSDI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHH
RMLLPVDADAEITMEANPGTFEAERFRSYRASGVNRLSIGIQSFNDAYLQALGRIHSAAE
HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
ARAAIDMARAHFDNINLDLMFALPGQTLAECEADVEAALSFDTNHVSLYHLTLEPNTYFA
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHEEECCCEEEEEEEEECCCCEEE
KYPPALPDDDAAFAMQDWIHARLAAAGYEHYEVSAYAKAGKRCKHNLNYWQFGDYLGIGP
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCEECCCCCCCCC
GAHGKLSFPHRVIREMRHKHPDTYLRQAETAGGAAVMQEQREVDAADLPFEFMLNALRLT
CCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHC
DGFPVTLFQERTGLPLRSIERQLDAAEQRGLLTRDHVAIRPTELGQRFLNDLQELFLADD
CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCC
EN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]