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The map label for this gene is ydfH [C]

Identifier: 187929336

GI number: 187929336

Start: 2373681

End: 2374439

Strand: Direct

Name: ydfH [C]

Synonym: Rpic_2257

Alternate gene names: 187929336

Gene position: 2373681-2374439 (Clockwise)

Preceding gene: 187929330

Following gene: 187929337

Centisome position: 60.21

GC content: 63.77

Gene sequence:

>759_bases
ATGTCCAAGAATCTCAAGCTGGTCTCCACGGAAGCGACGTTGAAGTCGGGCGTCAAGGCATCGGGGGCAACACGCATGTC
GGTCGAAGAACGGATGTATCACGAGATCTACGACGCGATCATGGAGCACCGCCTGCCCCCGCGCACCAAGCTGACGGAGC
ATGCGCTGTGCGAAATCTATGCCACCGCGCGTCATACGGTGCGCAAGGTCTTCTCCCAACTGGCCGCTGACGGCCTGGTT
GACCTCGAGCCGAATCGCGGCGCGTTCATCGCGGCGCCCTCCATCGACGAAGCCCACGCCATGTTCGAGCTGCGTCAGAT
CCTGGAGCGTGCGGTGCTCGACAAGGTCGGCCATAGCAGCAATCCCAAGGCAGCCATCGCCCCGCTGCTGGAACTCGTCA
AACAGGAACGCCAGGCGTTTGTCACGCAGGACCGCCCGCGCTGGATTCGCCTGTCTGCAGAATTTCACGTAGCGCTGGCC
GAGCAGTCCGGCAACCCGCTGGTGGTCGAGATGATGCGCCGGCTGGTGTCGCGCACCACCCTGATGATCGCCAGCGTCGA
GGCCCCGGGCAACAACGCCTGCTCGTTCGACGAACACCTCGACATCCTCAATGCACTGGAGCGTGGCGACGCCAGCGCTG
CCCAGGCCCACATGGCCCAGCACTTGCAATGCTGCGCCGATCGCGTGCGCCCCGAAGCGCCCGCTGATTTCGATTTGCGT
TCGGTATTGGGCCCACGCGGCGGGAAGGACAAAGTCTAG

Upstream 100 bases:

>100_bases
AACGCATTTTGTTGACAATATTGAAGGCTGCCACGAATAATTGTCAACAGGTTTTCGCAGTGGCCTATGCTGCGGCGCGT
TACTCAAAGGCGGATCTGCC

Downstream 100 bases:

>100_bases
GACCGGTTCAGCTGTATCGGGCGAGCTGGCACGACAGAGGCCGGCCGTCCAAGAACCTGTCCACGATCCGTAGCGACCTG
CCGAAGGTTGGCCCCGGGAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator Protein GntR Family; GntR Domain-Containing Protein; Regulatory Protein; Transcriptional Regulator Gntr Family; FCD Domain Protein; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; GntR Family Transcription Regulator Protein; Gntr Family Transcriptional Regulator; GntR Family Regulatory; Transcriptional Regulatory Protein GntR Family; Bacterial Regulatory Protein; GntR Family Transcription Regulator; Transcriptional Regulator MdcY Family Protein; Transcription Regulator Protein; Regulatory Protein GntR HTHGntR; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSKNLKLVSTEATLKSGVKASGATRMSVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIYATARHTVRKVFSQLAADGLV
DLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGHSSNPKAAIAPLLELVKQERQAFVTQDRPRWIRLSAEFHVALA
EQSGNPLVVEMMRRLVSRTTLMIASVEAPGNNACSFDEHLDILNALERGDASAAQAHMAQHLQCCADRVRPEAPADFDLR
SVLGPRGGKDKV

Sequences:

>Translated_252_residues
MSKNLKLVSTEATLKSGVKASGATRMSVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIYATARHTVRKVFSQLAADGLV
DLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGHSSNPKAAIAPLLELVKQERQAFVTQDRPRWIRLSAEFHVALA
EQSGNPLVVEMMRRLVSRTTLMIASVEAPGNNACSFDEHLDILNALERGDASAAQAHMAQHLQCCADRVRPEAPADFDLR
SVLGPRGGKDKV
>Mature_251_residues
SKNLKLVSTEATLKSGVKASGATRMSVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIYATARHTVRKVFSQLAADGLVD
LEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGHSSNPKAAIAPLLELVKQERQAFVTQDRPRWIRLSAEFHVALAE
QSGNPLVVEMMRRLVSRTTLMIASVEAPGNNACSFDEHLDILNALERGDASAAQAHMAQHLQCCADRVRPEAPADFDLRS
VLGPRGGKDKV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27881; Mature: 27750

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNLKLVSTEATLKSGVKASGATRMSVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIY
CCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ATARHTVRKVFSQLAADGLVDLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGHSS
HHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
NPKAAIAPLLELVKQERQAFVTQDRPRWIRLSAEFHVALAEQSGNPLVVEMMRRLVSRTT
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHH
LMIASVEAPGNNACSFDEHLDILNALERGDASAAQAHMAQHLQCCADRVRPEAPADFDLR
HHEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
SVLGPRGGKDKV
HHHCCCCCCCCC
>Mature Secondary Structure 
SKNLKLVSTEATLKSGVKASGATRMSVEERMYHEIYDAIMEHRLPPRTKLTEHALCEIY
CCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ATARHTVRKVFSQLAADGLVDLEPNRGAFIAAPSIDEAHAMFELRQILERAVLDKVGHSS
HHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
NPKAAIAPLLELVKQERQAFVTQDRPRWIRLSAEFHVALAEQSGNPLVVEMMRRLVSRTT
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHH
LMIASVEAPGNNACSFDEHLDILNALERGDASAAQAHMAQHLQCCADRVRPEAPADFDLR
HHEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
SVLGPRGGKDKV
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA