Click here to switch to the map view.

The map label for this gene is yhxC [H]

Identifier: 187929252

GI number: 187929252

Start: 2285704

End: 2286417

Strand: Reverse

Name: yhxC [H]

Synonym: Rpic_2173

Alternate gene names: 187929252

Gene position: 2286417-2285704 (Counterclockwise)

Preceding gene: 187929254

Following gene: 187929251

Centisome position: 57.99

GC content: 65.83

Gene sequence:

>714_bases
ATGACTTCGAAGACCTTGCAGGATCAGTCCGTGGTGGTGTTGGGCGGTACGGCCGGTATTGGCCAGGCGGTGGCACGCGC
GGCTGTAGCCGAAGGGGCGCGCGTGACGGTGCTGGGGCGCTCGGCCAAAGCGGCGGATGGCGCGCACGGCATTGCCGTCG
ACGCGAACGACACGGCGTCGCTCGCCAGCGCGCTGGCGCAGGCAGCCCAGTTGTCGCCCAGCGGCAAGATCGACCATCTC
GTCATCACCATCGGCTCGCGTACGAGCCCACCGCCGTTTGCCGCGCTGCAACGTGCTGACCTGGAACAGGCGTTTGGCAC
CAAGTTCTTTGCCGCCTTGATGGCAGTGCAGGCCGCATTGCCACATCTGGCGGAACGCGCATCGATTACGCTCACCTCTG
GCCTGCTTTCACGCAAGGCGACAGCAACCGGCCTGCTGCGTGGCTCGATCAACGCGGCGGTGGAAGCTGCTGGCAAGAAC
CTGGCGAAGGAACTGGCACCGCGTCGTGTCAACGTGATCAGCCCCGGTGTGGTGGATACGGAAGTATGGGGTGCGCCGGC
AGATCGGCAGGCCATGCTTGCGCGCATCGGCAGCGGCCTGCCGGTCGGCCGCGTCGGCACGCCGGAAGACCTCGCCCAAG
GCTACCTGCTGGCCATGACCAACGGTTTCATGACCGGCGCCATCATCGACATTGAAGGAGGCGGTTTGCTATGA

Upstream 100 bases:

>100_bases
TCAAAGCATAGCCAGATTATCTTGCTTTTGTTTGATGAAAGAATGGCCCAATTGATTGACAGTTTTTTCTTTCCTCCTCT
CAAAACAAAGGAGCATTGGC

Downstream 100 bases:

>100_bases
CACCCGACGGCGATTGGACCTTCGACCACGTGAACTTTCACGTGGCAGGAGATGCGCCCATCCTGAAATTCTTCGCCGAT
GTGCTCGGCTGGAAACCGGG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFX [H]

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MTSKTLQDQSVVVLGGTAGIGQAVARAAVAEGARVTVLGRSAKAADGAHGIAVDANDTASLASALAQAAQLSPSGKIDHL
VITIGSRTSPPPFAALQRADLEQAFGTKFFAALMAVQAALPHLAERASITLTSGLLSRKATATGLLRGSINAAVEAAGKN
LAKELAPRRVNVISPGVVDTEVWGAPADRQAMLARIGSGLPVGRVGTPEDLAQGYLLAMTNGFMTGAIIDIEGGGLL

Sequences:

>Translated_237_residues
MTSKTLQDQSVVVLGGTAGIGQAVARAAVAEGARVTVLGRSAKAADGAHGIAVDANDTASLASALAQAAQLSPSGKIDHL
VITIGSRTSPPPFAALQRADLEQAFGTKFFAALMAVQAALPHLAERASITLTSGLLSRKATATGLLRGSINAAVEAAGKN
LAKELAPRRVNVISPGVVDTEVWGAPADRQAMLARIGSGLPVGRVGTPEDLAQGYLLAMTNGFMTGAIIDIEGGGLL
>Mature_236_residues
TSKTLQDQSVVVLGGTAGIGQAVARAAVAEGARVTVLGRSAKAADGAHGIAVDANDTASLASALAQAAQLSPSGKIDHLV
ITIGSRTSPPPFAALQRADLEQAFGTKFFAALMAVQAALPHLAERASITLTSGLLSRKATATGLLRGSINAAVEAAGKNL
AKELAPRRVNVISPGVVDTEVWGAPADRQAMLARIGSGLPVGRVGTPEDLAQGYLLAMTNGFMTGAIIDIEGGGLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Escherichia coli, GI1789378, Length=255, Percent_Identity=25.8823529411765, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24643142, Length=240, Percent_Identity=29.5833333333333, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=28.8617886178862, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 23853; Mature: 23721

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKTLQDQSVVVLGGTAGIGQAVARAAVAEGARVTVLGRSAKAADGAHGIAVDANDTAS
CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCHHH
LASALAQAAQLSPSGKIDHLVITIGSRTSPPPFAALQRADLEQAFGTKFFAALMAVQAAL
HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PHLAERASITLTSGLLSRKATATGLLRGSINAAVEAAGKNLAKELAPRRVNVISPGVVDT
HHHHHHCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH
EVWGAPADRQAMLARIGSGLPVGRVGTPEDLAQGYLLAMTNGFMTGAIIDIEGGGLL
HCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCEEEEEECCCEEEEEEEECCCCCC
>Mature Secondary Structure 
TSKTLQDQSVVVLGGTAGIGQAVARAAVAEGARVTVLGRSAKAADGAHGIAVDANDTAS
CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCHHH
LASALAQAAQLSPSGKIDHLVITIGSRTSPPPFAALQRADLEQAFGTKFFAALMAVQAAL
HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PHLAERASITLTSGLLSRKATATGLLRGSINAAVEAAGKNLAKELAPRRVNVISPGVVDT
HHHHHHCEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH
EVWGAPADRQAMLARIGSGLPVGRVGTPEDLAQGYLLAMTNGFMTGAIIDIEGGGLL
HCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCEEEEEECCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 8196543 [H]