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The map label for this gene is yfdE [H]

Identifier: 187929139

GI number: 187929139

Start: 2171152

End: 2172306

Strand: Reverse

Name: yfdE [H]

Synonym: Rpic_2060

Alternate gene names: 187929139

Gene position: 2172306-2171152 (Counterclockwise)

Preceding gene: 187929140

Following gene: 187929130

Centisome position: 55.1

GC content: 64.33

Gene sequence:

>1155_bases
ATGCATCACGACGACGCTTCATCGCTGCCGCTCGCCGGCATCCGTGTGCTGGAATTCACGCACATGGTCATGGGCCCCAC
CTGCGGGATGATCCTGGCCGACCTCGGTGCCGAAGTCATCAAGGTCGAGCCGCCCGGCGGCGACAAGACACGCAATCTGC
CCGGCCTGGGCATCGGCTTCTTCCGCGCGTTCAACCGCAACAAGAAGAGCGTGGTGCTCGACATCACCACGGAGGAGGGT
CGCGCCACCGCGCGTGAGCTTGCCGGCCAGTGCGATGTGGTACTCGAAAACTTTCGCCCGGGCCTGATGGAAAAGCTCGG
GCTCGACCACGCATCGCTGTCGGCCGACTATCCGCACCTCATCTATGTGTCGCACAAGGGCTTTCTGCCGGGGCCGTACG
AGAACCGCCTGGCGTTGGATGAGGTCGTGCAAATGATGGGCGGGCTGTCGTATATGACCGGACCTGTAGGACGTCCGTTG
CGCGCAGGCACCTCCGTCAACGACATCATGGGCGGTATGTTCGGCGCCATTGGCGTGCTGGCGGCACTGCGCGAGCGGGA
CCGTACCGGCAAAGGGCAGGAAATTCAGAGCGGGCTGTTCGAGAACTGCGTGTTCCTCGCATCGCAACACATGCAGCAGT
ACGCCATGACTGGCGAAGCCCCGCCGCCGATGCCTGCGCGCGTGTCGGCATGGAGCGTCTATGACATCTTCACGCTGGCC
GGTGGCGAGCAGCTCTTCATTGGCGCAGTGAGCGACAAGCAATTCACGACGCTGTGCCAACTACTGGGCCATCCGGAGCT
ACTCGACAACCCGCAGTACGCGAACAACACGCTGCGCGTTGCGGTGCGTCCACAACTGCTGCGGGAGCTGGGCGGCATCC
TGGCCGAACACGATGCCGCCGCGCTCGCGCCCAAGCTCGAAGCGGCGGGCATTCCCTACGCGCCCATCGTCCGGCCTGAT
CAACTGCTCGATGATCCGCACCTCAAGGCGAGCGGCGGTCTGGTGCCCATGCAGATGGACGATGGCTCGACAGGCCCCGC
TGTATTACTGCCGCTGCTGATGGGTGGCCAGCGACCGGGCGTGCGTCATCCACTGCCCAAGGCTGGCGAACACAACGACG
AAATTCTCTCCGGGCTGGGTGCACACGCCGCCTGA

Upstream 100 bases:

>100_bases
TGCACGGCACGCTGTGGCGCGCCGGCCTGCCCAAGACCTTCCACCCGAATTCTCCCCAAGCGGCCCAATCTGCCCAATCC
GCCATCCTGGCTTGACAAAC

Downstream 100 bases:

>100_bases
GGCACCGGAGTGCGCAATAGGAAAGGGCAGCCGAAGCTGCCCTTTTTTCATGAGGCTGCGGCCGAATCGACCGCAGCCTC
CACACGCTTAGAAGATGTGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MHHDDASSLPLAGIRVLEFTHMVMGPTCGMILADLGAEVIKVEPPGGDKTRNLPGLGIGFFRAFNRNKKSVVLDITTEEG
RATARELAGQCDVVLENFRPGLMEKLGLDHASLSADYPHLIYVSHKGFLPGPYENRLALDEVVQMMGGLSYMTGPVGRPL
RAGTSVNDIMGGMFGAIGVLAALRERDRTGKGQEIQSGLFENCVFLASQHMQQYAMTGEAPPPMPARVSAWSVYDIFTLA
GGEQLFIGAVSDKQFTTLCQLLGHPELLDNPQYANNTLRVAVRPQLLRELGGILAEHDAAALAPKLEAAGIPYAPIVRPD
QLLDDPHLKASGGLVPMQMDDGSTGPAVLLPLLMGGQRPGVRHPLPKAGEHNDEILSGLGAHAA

Sequences:

>Translated_384_residues
MHHDDASSLPLAGIRVLEFTHMVMGPTCGMILADLGAEVIKVEPPGGDKTRNLPGLGIGFFRAFNRNKKSVVLDITTEEG
RATARELAGQCDVVLENFRPGLMEKLGLDHASLSADYPHLIYVSHKGFLPGPYENRLALDEVVQMMGGLSYMTGPVGRPL
RAGTSVNDIMGGMFGAIGVLAALRERDRTGKGQEIQSGLFENCVFLASQHMQQYAMTGEAPPPMPARVSAWSVYDIFTLA
GGEQLFIGAVSDKQFTTLCQLLGHPELLDNPQYANNTLRVAVRPQLLRELGGILAEHDAAALAPKLEAAGIPYAPIVRPD
QLLDDPHLKASGGLVPMQMDDGSTGPAVLLPLLMGGQRPGVRHPLPKAGEHNDEILSGLGAHAA
>Mature_384_residues
MHHDDASSLPLAGIRVLEFTHMVMGPTCGMILADLGAEVIKVEPPGGDKTRNLPGLGIGFFRAFNRNKKSVVLDITTEEG
RATARELAGQCDVVLENFRPGLMEKLGLDHASLSADYPHLIYVSHKGFLPGPYENRLALDEVVQMMGGLSYMTGPVGRPL
RAGTSVNDIMGGMFGAIGVLAALRERDRTGKGQEIQSGLFENCVFLASQHMQQYAMTGEAPPPMPARVSAWSVYDIFTLA
GGEQLFIGAVSDKQFTTLCQLLGHPELLDNPQYANNTLRVAVRPQLLRELGGILAEHDAAALAPKLEAAGIPYAPIVRPD
QLLDDPHLKASGGLVPMQMDDGSTGPAVLLPLLMGGQRPGVRHPLPKAGEHNDEILSGLGAHAA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=390, Percent_Identity=33.0769230769231, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI300863124, Length=336, Percent_Identity=34.8214285714286, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI300863126, Length=383, Percent_Identity=30.0261096605744, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI13376042, Length=336, Percent_Identity=30.6547619047619, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI266456254, Length=378, Percent_Identity=29.6296296296296, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI42794625, Length=378, Percent_Identity=29.6296296296296, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI266458393, Length=274, Percent_Identity=33.2116788321168, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI266458397, Length=258, Percent_Identity=33.7209302325581, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI42822893, Length=120, Percent_Identity=40.8333333333333, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI266458395, Length=120, Percent_Identity=40.8333333333333, Blast_Score=82, Evalue=7e-16,
Organism=Escherichia coli, GI87082093, Length=338, Percent_Identity=32.2485207100592, Blast_Score=182, Evalue=5e-47,
Organism=Escherichia coli, GI1788717, Length=407, Percent_Identity=29.97542997543, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1786222, Length=393, Percent_Identity=25.4452926208651, Blast_Score=82, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=297, Percent_Identity=24.9158249158249, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=269, Percent_Identity=28.2527881040892, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648431, Length=379, Percent_Identity=35.3562005277045, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24585488, Length=262, Percent_Identity=32.0610687022901, Blast_Score=113, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41026; Mature: 41026

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHDDASSLPLAGIRVLEFTHMVMGPTCGMILADLGAEVIKVEPPGGDKTRNLPGLGIGF
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHH
FRAFNRNKKSVVLDITTEEGRATARELAGQCDVVLENFRPGLMEKLGLDHASLSADYPHL
HHHHCCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHCCCHHHHHHCCCHHHCCCCCCEE
IYVSHKGFLPGPYENRLALDEVVQMMGGLSYMTGPVGRPLRAGTSVNDIMGGMFGAIGVL
EEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AALRERDRTGKGQEIQSGLFENCVFLASQHMQQYAMTGEAPPPMPARVSAWSVYDIFTLA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHEEEEEEC
GGEQLFIGAVSDKQFTTLCQLLGHPELLDNPQYANNTLRVAVRPQLLRELGGILAEHDAA
CCCEEEEEECCCHHHHHHHHHHCCCHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCHH
ALAPKLEAAGIPYAPIVRPDQLLDDPHLKASGGLVPMQMDDGSTGPAVLLPLLMGGQRPG
HHCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC
VRHPLPKAGEHNDEILSGLGAHAA
CCCCCCCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MHHDDASSLPLAGIRVLEFTHMVMGPTCGMILADLGAEVIKVEPPGGDKTRNLPGLGIGF
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHH
FRAFNRNKKSVVLDITTEEGRATARELAGQCDVVLENFRPGLMEKLGLDHASLSADYPHL
HHHHCCCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHCCCHHHHHHCCCHHHCCCCCCEE
IYVSHKGFLPGPYENRLALDEVVQMMGGLSYMTGPVGRPLRAGTSVNDIMGGMFGAIGVL
EEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AALRERDRTGKGQEIQSGLFENCVFLASQHMQQYAMTGEAPPPMPARVSAWSVYDIFTLA
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHEEEEEEC
GGEQLFIGAVSDKQFTTLCQLLGHPELLDNPQYANNTLRVAVRPQLLRELGGILAEHDAA
CCCEEEEEECCCHHHHHHHHHHCCCHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCHH
ALAPKLEAAGIPYAPIVRPDQLLDDPHLKASGGLVPMQMDDGSTGPAVLLPLLMGGQRPG
HHCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC
VRHPLPKAGEHNDEILSGLGAHAA
CCCCCCCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]