Click here to switch to the map view.

The map label for this gene is yhjB [H]

Identifier: 187929125

GI number: 187929125

Start: 2154627

End: 2155286

Strand: Direct

Name: yhjB [H]

Synonym: Rpic_2046

Alternate gene names: 187929125

Gene position: 2154627-2155286 (Clockwise)

Preceding gene: 187929120

Following gene: 187929126

Centisome position: 54.65

GC content: 61.67

Gene sequence:

>660_bases
ATGAATATTCTGGTAATCGATAGCTTGCCGCTTTTTGCGGCAGGTGTGTCTAATGTATTGAATGCACTCGACGCACAGGG
TGTGTTTATCGATACGCACTACACGGCGCAAATCGGACCGGCTTGCAGGCAAGCCGAGCCCAGCGCCGTGGTGATGGAAT
GGAGCGCACAGGACGACGACGCACGGCAGCGCCTGTCGGAGTTGAAAGCGGTGTTGCCGGAAGTGCCTGTGTTGCTGACG
GTACAAGCTGTGGGCCGCCACGTGGTCGGCGACGCGCTGCGCTTTGGCGCGGCCGGCGTGGTTGACCGGCAGGCAACGGC
CGATGTTCTGCTCGAAGCCCTGCAGCGCATTACCTCGGGCGCGGTCTACTTGCCGCCCATCAGCAATCTCTATCCCGACG
ATCCGCGCCAGAGCCCGGGAGAAAGCCCAGCCGAACTCTGGCGCCGGCTCACGCCGCGGCAGCATGAGGTGCTGCAACTG
CTTGCAGAAGGCAAATCCAACAAGCAGATCTGTCGCGTGCTCAACGTGGCTGAGGGCACGATCAAGAACCATCTGTACGC
GCTGTTCCGGCAGATTGGCGTCAACAACCGGACCGAGGCCGCGCTCTGGCTCTCGCGCTGCAAGGCAAGCCTCGTCCGCT
TGCAGATGTGTGCGATGTAG

Upstream 100 bases:

>100_bases
ACTTTCGGCACTGAACTTCCGTTTCAATGCAACCGGATCGATCCCGCCCTACAAAACAATCGGTTTCGCCGAAAATAATT
AACTGAAGTACGAGGGGTCG

Downstream 100 bases:

>100_bases
CACCGCACGCCACCACTCGCCCGTAGCCTCCGGCAGCCTTGCCGGACGTTACGGGCCAGCGAGGTCGCCACCCATGAAAA
CACTGAGCCGGTCATTGCAT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MNILVIDSLPLFAAGVSNVLNALDAQGVFIDTHYTAQIGPACRQAEPSAVVMEWSAQDDDARQRLSELKAVLPEVPVLLT
VQAVGRHVVGDALRFGAAGVVDRQATADVLLEALQRITSGAVYLPPISNLYPDDPRQSPGESPAELWRRLTPRQHEVLQL
LAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVNNRTEAALWLSRCKASLVRLQMCAM

Sequences:

>Translated_219_residues
MNILVIDSLPLFAAGVSNVLNALDAQGVFIDTHYTAQIGPACRQAEPSAVVMEWSAQDDDARQRLSELKAVLPEVPVLLT
VQAVGRHVVGDALRFGAAGVVDRQATADVLLEALQRITSGAVYLPPISNLYPDDPRQSPGESPAELWRRLTPRQHEVLQL
LAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVNNRTEAALWLSRCKASLVRLQMCAM
>Mature_219_residues
MNILVIDSLPLFAAGVSNVLNALDAQGVFIDTHYTAQIGPACRQAEPSAVVMEWSAQDDDARQRLSELKAVLPEVPVLLT
VQAVGRHVVGDALRFGAAGVVDRQATADVLLEALQRITSGAVYLPPISNLYPDDPRQSPGESPAELWRRLTPRQHEVLQL
LAEGKSNKQICRVLNVAEGTIKNHLYALFRQIGVNNRTEAALWLSRCKASLVRLQMCAM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789937, Length=163, Percent_Identity=33.7423312883436, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 23942; Mature: 23942

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILVIDSLPLFAAGVSNVLNALDAQGVFIDTHYTAQIGPACRQAEPSAVVMEWSAQDDD
CCEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHCCCCCEEEEEECCCCHH
ARQRLSELKAVLPEVPVLLTVQAVGRHVVGDALRFGAAGVVDRQATADVLLEALQRITSG
HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
AVYLPPISNLYPDDPRQSPGESPAELWRRLTPRQHEVLQLLAEGKSNKQICRVLNVAEGT
CEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
IKNHLYALFRQIGVNNRTEAALWLSRCKASLVRLQMCAM
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNILVIDSLPLFAAGVSNVLNALDAQGVFIDTHYTAQIGPACRQAEPSAVVMEWSAQDDD
CCEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCHHHCCCCCEEEEEECCCCHH
ARQRLSELKAVLPEVPVLLTVQAVGRHVVGDALRFGAAGVVDRQATADVLLEALQRITSG
HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
AVYLPPISNLYPDDPRQSPGESPAELWRRLTPRQHEVLQLLAEGKSNKQICRVLNVAEGT
CEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
IKNHLYALFRQIGVNNRTEAALWLSRCKASLVRLQMCAM
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]