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The map label for this gene is ykgD [C]

Identifier: 187929047

GI number: 187929047

Start: 2076975

End: 2077889

Strand: Direct

Name: ykgD [C]

Synonym: Rpic_1967

Alternate gene names: 187929047

Gene position: 2076975-2077889 (Clockwise)

Preceding gene: 187929045

Following gene: 187929064

Centisome position: 52.68

GC content: 66.01

Gene sequence:

>915_bases
ATGGACGCGCTCAGTCAATTCATACAGCTCACCCGGCCGCAGGCCAGCCTCGATTTGCGCTGCCTGTTCCAGGGACCGTT
CTCGATCCCACATGATCCGGAGCCGAATGGTCAGGTGCCGTTCCACCTGGTGCTCTCGGGCAGATGCCTCGTCGACACCG
GCGGCCGCACGCTCTCACTGCACGAAGGCGATTTCATCCTGTTCCCGCACGGCGAGGCACACACGATTCACGACCCCGGC
GCTGCCGACGCACCCACGCGAAAACCCCGCGCATCGCACGATGGCATGCTGCCGGTTCGCCAAACTGGCCGCGGTGCCGC
GGAGGTCGATCTGCTGTGCGGCCGCTTCGTCCACGAACACGGCTCGACCACGCTGCTGGTGCGTACGCTGCCCGACCCAC
TGCACGTGTCATTGAGTGATAGCGCGTCGTTTCCGGCGCTGCAAGCACTCATTGGGCTGATGCGCGACGAAGCCGAAACG
CGCGCGCCCGGCGCGCTGGCGATCGTTACCTCACTGAGCCAGGCGTTGCTCACAATGGCACTGCGCGTCTACGGCCAGCG
GGAAAACGCGAGCCCCGGCACGCTGACGCTGCTATCAGACGCGCGCCTCGGCCCATCCGTACAAGCCATGCTCGGTGCGC
CCGAACGCGCATGGACCATCGACAGCCTCGCCGATCTGGCGGCCATGTCCCGCGCCACCTACGCGCGACACTTCAAGGCG
CGCGCCGATATGACGGTGTGGGACTTTCTCACGCGCGTGCGCATGACGCTCGCGTGCGACGCGTTGATCCATACGCGGCT
CAGCGCAGGCGAAATCGGCGCGCGTGTCGGCTATCAATCGGAGGCGGCGTTCGGCAAGGCGTTCAAGCAACAACTGGGAA
TGACGCCAGCGCGGTATCGGCGGGCGACGAGTTGA

Upstream 100 bases:

>100_bases
TGTGGCGCTGGCCTGATGTCGGCGCCGTTGGAAAGAGTATTGTCTTTAAGGGCGATCCACTGAATACTTCTTTCACGCAA
TTTCTGTCGAAATCGTCTCA

Downstream 100 bases:

>100_bases
TCATCCTCCCGCGTCGCCACCTTCGCTAGCGCTCTGGCTTGCGGCGAATGCCCGTTTTCGCGGTGCCTTGCGGCAGGTTG
GACTCGCGTGCAGGGCGCGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDALSQFIQLTRPQASLDLRCLFQGPFSIPHDPEPNGQVPFHLVLSGRCLVDTGGRTLSLHEGDFILFPHGEAHTIHDPG
AADAPTRKPRASHDGMLPVRQTGRGAAEVDLLCGRFVHEHGSTTLLVRTLPDPLHVSLSDSASFPALQALIGLMRDEAET
RAPGALAIVTSLSQALLTMALRVYGQRENASPGTLTLLSDARLGPSVQAMLGAPERAWTIDSLADLAAMSRATYARHFKA
RADMTVWDFLTRVRMTLACDALIHTRLSAGEIGARVGYQSEAAFGKAFKQQLGMTPARYRRATS

Sequences:

>Translated_304_residues
MDALSQFIQLTRPQASLDLRCLFQGPFSIPHDPEPNGQVPFHLVLSGRCLVDTGGRTLSLHEGDFILFPHGEAHTIHDPG
AADAPTRKPRASHDGMLPVRQTGRGAAEVDLLCGRFVHEHGSTTLLVRTLPDPLHVSLSDSASFPALQALIGLMRDEAET
RAPGALAIVTSLSQALLTMALRVYGQRENASPGTLTLLSDARLGPSVQAMLGAPERAWTIDSLADLAAMSRATYARHFKA
RADMTVWDFLTRVRMTLACDALIHTRLSAGEIGARVGYQSEAAFGKAFKQQLGMTPARYRRATS
>Mature_304_residues
MDALSQFIQLTRPQASLDLRCLFQGPFSIPHDPEPNGQVPFHLVLSGRCLVDTGGRTLSLHEGDFILFPHGEAHTIHDPG
AADAPTRKPRASHDGMLPVRQTGRGAAEVDLLCGRFVHEHGSTTLLVRTLPDPLHVSLSDSASFPALQALIGLMRDEAET
RAPGALAIVTSLSQALLTMALRVYGQRENASPGTLTLLSDARLGPSVQAMLGAPERAWTIDSLADLAAMSRATYARHFKA
RADMTVWDFLTRVRMTLACDALIHTRLSAGEIGARVGYQSEAAFGKAFKQQLGMTPARYRRATS

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=303, Percent_Identity=28.3828382838284, Blast_Score=132, Evalue=4e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32867; Mature: 32867

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALSQFIQLTRPQASLDLRCLFQGPFSIPHDPEPNGQVPFHLVLSGRCLVDTGGRTLSL
CHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECEEEEECCCCEEEE
HEGDFILFPHGEAHTIHDPGAADAPTRKPRASHDGMLPVRQTGRGAAEVDLLCGRFVHEH
ECCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHC
GSTTLLVRTLPDPLHVSLSDSASFPALQALIGLMRDEAETRAPGALAIVTSLSQALLTMA
CCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LRVYGQRENASPGTLTLLSDARLGPSVQAMLGAPERAWTIDSLADLAAMSRATYARHFKA
HHHHCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHH
RADMTVWDFLTRVRMTLACDALIHTRLSAGEIGARVGYQSEAAFGKAFKQQLGMTPARYR
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
RATS
CCCC
>Mature Secondary Structure
MDALSQFIQLTRPQASLDLRCLFQGPFSIPHDPEPNGQVPFHLVLSGRCLVDTGGRTLSL
CHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECEEEEECCCCEEEE
HEGDFILFPHGEAHTIHDPGAADAPTRKPRASHDGMLPVRQTGRGAAEVDLLCGRFVHEH
ECCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHC
GSTTLLVRTLPDPLHVSLSDSASFPALQALIGLMRDEAETRAPGALAIVTSLSQALLTMA
CCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LRVYGQRENASPGTLTLLSDARLGPSVQAMLGAPERAWTIDSLADLAAMSRATYARHFKA
HHHHCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHH
RADMTVWDFLTRVRMTLACDALIHTRLSAGEIGARVGYQSEAAFGKAFKQQLGMTPARYR
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
RATS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]