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The map label for this gene is comL [H]

Identifier: 187929000

GI number: 187929000

Start: 2025486

End: 2026262

Strand: Direct

Name: comL [H]

Synonym: Rpic_1920

Alternate gene names: 187929000

Gene position: 2025486-2026262 (Clockwise)

Preceding gene: 187928997

Following gene: 187929004

Centisome position: 51.37

GC content: 60.49

Gene sequence:

>777_bases
ATGGCAGGCGTTGCATGCCTGGCTATCTCGGCCTGCGGCATCCTGCCGGAACAGCAAGACGAAACGGCTGGCTGGTCAGC
CAACAAATTATATTCCGAAGCGAAGGACTCGCTCGACGGCGGCGACTACGCCAAGGCGGTCAAGTACTACGAAAAGCTCG
AAAGCCGCTATCCGTTCGGCCAATACGCCCAACAGGCCCAGATCGAGACCGCCTACGCCAACTACAAGGATGGCGAGACG
GCTGCCGCACTGGCCGCCGTGGACCGCTTCATCCAGTTGCACCCCAATCACCCCAGCGTCGATTACGCCTATTACCTCAA
AGGCCTGATCAACTTCAACGACAACCTGGGCTGGCTCGGCCGCTTCTCGAACCAGGACTTGAGCGAGCGCGACCCGAAGG
CCGCACGCGCCGCGTACGATGCGTTCAAGACGCTGATCACGCGTTTCCCGAACAGCAAGTACACGCCGGACGCCACCCAG
CGCATGCAGTACATCGTGAACGCGATGGCCGAGCATGAAGTGGGCGCCGCACGCTACTACTACCGCCGCGGAGCCTACCT
GGCCGCCGTCAACCGCGCGCAGGACGCCATCAAGGATTACGACCGCGCCCCGGCTGTGGAAGAAGCGCTGTACATCATGA
TGAAGTCGTACGAAGCACTGGGCATGAAAGACATGCGCGACGACACCGAACGCATCATCAAGCAGAACTACCCGAAGAGT
GATTTCCTCGCCTACGGCCAGCGCAAGAAAGACAAGCCCTGGTACCAATGGTGGTGA

Upstream 100 bases:

>100_bases
TCATTCAGAAAAGGTGCCCATGTCGGTCACGAGCGTAAAGCAGGCGCGTATTGTTAGTCGAATTGGCAATCGAATCCGCG
CGCAAATCGGAGCAGTGTTG

Downstream 100 bases:

>100_bases
GCAAGGTTCGCACAGCACAGCAAAAAGCCCGGTCGATTGGCCGGGCTTTTTGTTTGTGCGTGCGGGTCAGTCTTCAGAGC
CGCCCGTGGGCTGCTCATCC

Product: outer membrane assembly lipoprotein YfiO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MAGVACLAISACGILPEQQDETAGWSANKLYSEAKDSLDGGDYAKAVKYYEKLESRYPFGQYAQQAQIETAYANYKDGET
AAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDAFKTLITRFPNSKYTPDATQ
RMQYIVNAMAEHEVGAARYYYRRGAYLAAVNRAQDAIKDYDRAPAVEEALYIMMKSYEALGMKDMRDDTERIIKQNYPKS
DFLAYGQRKKDKPWYQWW

Sequences:

>Translated_258_residues
MAGVACLAISACGILPEQQDETAGWSANKLYSEAKDSLDGGDYAKAVKYYEKLESRYPFGQYAQQAQIETAYANYKDGET
AAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDAFKTLITRFPNSKYTPDATQ
RMQYIVNAMAEHEVGAARYYYRRGAYLAAVNRAQDAIKDYDRAPAVEEALYIMMKSYEALGMKDMRDDTERIIKQNYPKS
DFLAYGQRKKDKPWYQWW
>Mature_257_residues
AGVACLAISACGILPEQQDETAGWSANKLYSEAKDSLDGGDYAKAVKYYEKLESRYPFGQYAQQAQIETAYANYKDGETA
AALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDAFKTLITRFPNSKYTPDATQR
MQYIVNAMAEHEVGAARYYYRRGAYLAAVNRAQDAIKDYDRAPAVEEALYIMMKSYEALGMKDMRDDTERIIKQNYPKSD
FLAYGQRKKDKPWYQWW

Specific function: Required for efficient transformation of Neisseria gonorrhoeae by species-related DNA [H]

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=235, Percent_Identity=37.0212765957447, Blast_Score=171, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29510; Mature: 29379

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AGVACLAISACGILPEQQDETAGWSANKLYSEAKDSLDGGDYAKAVKYYEKLESRYPFG
CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH
QYAQQAQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLG
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHC
RFSNQDLSERDPKAARAAYDAFKTLITRFPNSKYTPDATQRMQYIVNAMAEHEVGAARYY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YRRGAYLAAVNRAQDAIKDYDRAPAVEEALYIMMKSYEALGMKDMRDDTERIIKQNYPKS
HHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCH
DFLAYGQRKKDKPWYQWW
HHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8830266 [H]