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The map label for this gene is 187928873

Identifier: 187928873

GI number: 187928873

Start: 1885419

End: 1886093

Strand: Direct

Name: 187928873

Synonym: Rpic_1791

Alternate gene names: NA

Gene position: 1885419-1886093 (Clockwise)

Preceding gene: 187928872

Following gene: 187928888

Centisome position: 47.82

GC content: 61.78

Gene sequence:

>675_bases
ATGGTTCGACGACTTGGTATTCGAGCGATCACGGTCACCTTGGTCTCACTTGTCTTTAGCGCGTCAGCTCTTGCCGAGAG
TGACCTCGCGCGCGGCGCGCAAGCCGCCCGCGCCTGCATGGCGTGCCATTCATTTGCGCCAGGCCGCCACATGACAGGCC
CGAGCTTGGCGGGCGTTTTGGGCCGCAAAGCAGGTACAGCGGACGGTTTCGCGCGCTATTCCGATGCCCTCAAGCAATCA
GGCCTGGTCTGGGACAAGCGAAACCTCGATGCATGGCTCAAGAATCCGGCAGCGCTGGTGTCGGGTAACGCGATGACCTT
TCCCGGCATTGCCGATGCACGCACGCGGGCCGATCTGATCGCCTACCTTGAGGCAGTTTCCACGGGTCGCGTAAAGGTTC
CTGATCGTGGCCTGCCGAATTTGAAGGAGTCCGATGCGGCGTCGCGGGTTACCTCAATCCGCTTTTGTGACGATGCCTAT
CGCCTCACCACCGCCGACCGGAAGACTCACGCCTTTTGGGAGTTCAACCTGCGATTCAAAACCGATGGCAGCGCTGCCGG
CCCGGCTGCCGGTCAGCCTGTGCTGATCGGCACAGGCATGCAGGGCGACCGCGCCGCCGTGGTTTTCGCACGCCCCGAAG
AAATCTCTGCCTTCATTCAGAGGCGGTGTCCATAA

Upstream 100 bases:

>100_bases
CCTACGCTGACCTCAGTGATGGCGAAGCCACACCGGAAGCGGAGCCGAACTGTTGCCATTAGCTTCGTGACAAACTTCAG
ATGGCAAATGGGAGCTCCCA

Downstream 100 bases:

>100_bases
AGACTGGCCACCCAGCCAACAGCATCTGGAACCCAGTGGCGATACCGCTGAATAAGCTGCGGGCGGGCCAGGTAGTTCTC
AACGCTTCCCGTCGTCACCG

Product: cytochrome c class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MVRRLGIRAITVTLVSLVFSASALAESDLARGAQAARACMACHSFAPGRHMTGPSLAGVLGRKAGTADGFARYSDALKQS
GLVWDKRNLDAWLKNPAALVSGNAMTFPGIADARTRADLIAYLEAVSTGRVKVPDRGLPNLKESDAASRVTSIRFCDDAY
RLTTADRKTHAFWEFNLRFKTDGSAAGPAAGQPVLIGTGMQGDRAAVVFARPEEISAFIQRRCP

Sequences:

>Translated_224_residues
MVRRLGIRAITVTLVSLVFSASALAESDLARGAQAARACMACHSFAPGRHMTGPSLAGVLGRKAGTADGFARYSDALKQS
GLVWDKRNLDAWLKNPAALVSGNAMTFPGIADARTRADLIAYLEAVSTGRVKVPDRGLPNLKESDAASRVTSIRFCDDAY
RLTTADRKTHAFWEFNLRFKTDGSAAGPAAGQPVLIGTGMQGDRAAVVFARPEEISAFIQRRCP
>Mature_224_residues
MVRRLGIRAITVTLVSLVFSASALAESDLARGAQAARACMACHSFAPGRHMTGPSLAGVLGRKAGTADGFARYSDALKQS
GLVWDKRNLDAWLKNPAALVSGNAMTFPGIADARTRADLIAYLEAVSTGRVKVPDRGLPNLKESDAASRVTSIRFCDDAY
RLTTADRKTHAFWEFNLRFKTDGSAAGPAAGQPVLIGTGMQGDRAAVVFARPEEISAFIQRRCP

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=103, Percent_Identity=38.8349514563107, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17539604, Length=107, Percent_Identity=39.2523364485981, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17566554, Length=106, Percent_Identity=38.6792452830189, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322508, Length=87, Percent_Identity=37.9310344827586, Blast_Score=79, Evalue=4e-16,
Organism=Drosophila melanogaster, GI17137204, Length=90, Percent_Identity=44.4444444444444, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI17137228, Length=102, Percent_Identity=40.1960784313725, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 23897; Mature: 23897

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRRLGIRAITVTLVSLVFSASALAESDLARGAQAARACMACHSFAPGRHMTGPSLAGVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
GRKAGTADGFARYSDALKQSGLVWDKRNLDAWLKNPAALVSGNAMTFPGIADARTRADLI
HCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHCCCHHEEECCCEECCCCCCHHHHHHHH
AYLEAVSTGRVKVPDRGLPNLKESDAASRVTSIRFCDDAYRLTTADRKTHAFWEFNLRFK
HHHHHHCCCEEECCCCCCCCCCHHHHHHHHHEEEEECCHHEEECCCCCEEEEEEEEEEEE
TDGSAAGPAAGQPVLIGTGMQGDRAAVVFARPEEISAFIQRRCP
CCCCCCCCCCCCCEEEECCCCCCCEEEEEECHHHHHHHHHHCCC
>Mature Secondary Structure
MVRRLGIRAITVTLVSLVFSASALAESDLARGAQAARACMACHSFAPGRHMTGPSLAGVL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
GRKAGTADGFARYSDALKQSGLVWDKRNLDAWLKNPAALVSGNAMTFPGIADARTRADLI
HCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHCCCHHEEECCCEECCCCCCHHHHHHHH
AYLEAVSTGRVKVPDRGLPNLKESDAASRVTSIRFCDDAYRLTTADRKTHAFWEFNLRFK
HHHHHHCCCEEECCCCCCCCCCHHHHHHHHHEEEEECCHHEEECCCCCEEEEEEEEEEEE
TDGSAAGPAAGQPVLIGTGMQGDRAAVVFARPEEISAFIQRRCP
CCCCCCCCCCCCCEEEECCCCCCCEEEEEECHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 174109 [H]