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The map label for this gene is trbB [H]

Identifier: 187928609

GI number: 187928609

Start: 1617649

End: 1618698

Strand: Reverse

Name: trbB [H]

Synonym: Rpic_1525

Alternate gene names: 187928609

Gene position: 1618698-1617649 (Counterclockwise)

Preceding gene: 187928626

Following gene: 187928608

Centisome position: 41.06

GC content: 60.67

Gene sequence:

>1050_bases
ATGACCGCGAATCATGACCCCTATTCCAATCAGCTCACGCCGCTCGAAGAAAGCGCCGTGAAGATGTTCTTTGAATCGCT
CAAGCCGATTCAACCGGTGCTTGAAGAGGCGACCGTGGCCGAAGTCATGATCAATCACCACAACAGCGTGTGGGTTGAAC
GCAAGGGCCGATTGGAGCGTCTCGATCTCATGCTGGAGCCCAAGAAGCTTGAAGGCGCAATCCGCGCGCTGGCTTCGTCG
GTTGAGAAATCGGCGGTCAAAGGCACCGATCAAGGGATCATCAACGCCGGCCATAAGGGGCTGCGGATCGCCGCAGTCAT
GCGCCCGACCGCAATCGACGGGCACGCCCTCAGCATTCGCCGTCACCGTGAAAAGAACCTGACGCTCTCCGACTACACGG
CGATGGGCGCGTTCTCTTCTTCCGTCGCGCGCAACCCTGACGACGATCAGATCATCTTCCCGCCCGACGTCTCCGACGAC
GGGCTCGCGCACGCGCTGTCGACCATGGTGCGGCAGCGCAAGAACGTGCTCGTCGCCGGTGGCACATCGTCCGGCAAAAC
CACCTTTCTCAACGCGCTCGTTGGCGAGATTCCACACGAAGAGCGAATCATCTCCATCGAGGACACCCAGGAACTGAAGC
TAAGCGTCCCGAACTGCGTTCGTCTTCTTTCGAATCCCGACAAGAAGGTCACGACCCAGCAATTGGTCGCGCTGAGCCTG
CGTTTTCGTCCCGACCGTGTGCTGGTTGGCGAGGTGCGTGGCGGCGAGGCCTTCGACTTCATTCAAGCCCTCAATACCGG
CCACGACGGCGGGATGGGCTCCCTGCACGCCAACAACGGCCGCACTGCGCTCTCCCGCCTGGAGAGCCTCGCCATGCTCG
GCATCCCGCTCGGCTCGCGATGGGATCTGAGCGACATGCGCAAGCTCATCGCCGACTGCTTCCACTACGTCGTGCACATG
CGGCGCACGGGCGAGATGCGGCACGTCTCCGAGATTCTGGAGATCCAGGGCTACGCAAACAACGACTACGTCATCAAACG
TGTTTTCTAA

Upstream 100 bases:

>100_bases
AGCCTTGCATCGTCGCCAATGCATTCATTCCGCGAAAGCTGAAAAAAATGACCCCGCTTTCGCCGCGAGGGCCTGATCCG
TTTTCCAAAAGAATAGCGCC

Downstream 100 bases:

>100_bases
GGGGGTTTCATCATGATCCAAGCAGTCCAGCGCCTGCTCAAACGCGCAACCACCTGGCGCGGCACGGTGGCACAAGCCGT
TGCCATCACCACCCTGCTCT

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MTANHDPYSNQLTPLEESAVKMFFESLKPIQPVLEEATVAEVMINHHNSVWVERKGRLERLDLMLEPKKLEGAIRALASS
VEKSAVKGTDQGIINAGHKGLRIAAVMRPTAIDGHALSIRRHREKNLTLSDYTAMGAFSSSVARNPDDDQIIFPPDVSDD
GLAHALSTMVRQRKNVLVAGGTSSGKTTFLNALVGEIPHEERIISIEDTQELKLSVPNCVRLLSNPDKKVTTQQLVALSL
RFRPDRVLVGEVRGGEAFDFIQALNTGHDGGMGSLHANNGRTALSRLESLAMLGIPLGSRWDLSDMRKLIADCFHYVVHM
RRTGEMRHVSEILEIQGYANNDYVIKRVF

Sequences:

>Translated_349_residues
MTANHDPYSNQLTPLEESAVKMFFESLKPIQPVLEEATVAEVMINHHNSVWVERKGRLERLDLMLEPKKLEGAIRALASS
VEKSAVKGTDQGIINAGHKGLRIAAVMRPTAIDGHALSIRRHREKNLTLSDYTAMGAFSSSVARNPDDDQIIFPPDVSDD
GLAHALSTMVRQRKNVLVAGGTSSGKTTFLNALVGEIPHEERIISIEDTQELKLSVPNCVRLLSNPDKKVTTQQLVALSL
RFRPDRVLVGEVRGGEAFDFIQALNTGHDGGMGSLHANNGRTALSRLESLAMLGIPLGSRWDLSDMRKLIADCFHYVVHM
RRTGEMRHVSEILEIQGYANNDYVIKRVF
>Mature_348_residues
TANHDPYSNQLTPLEESAVKMFFESLKPIQPVLEEATVAEVMINHHNSVWVERKGRLERLDLMLEPKKLEGAIRALASSV
EKSAVKGTDQGIINAGHKGLRIAAVMRPTAIDGHALSIRRHREKNLTLSDYTAMGAFSSSVARNPDDDQIIFPPDVSDDG
LAHALSTMVRQRKNVLVAGGTSSGKTTFLNALVGEIPHEERIISIEDTQELKLSVPNCVRLLSNPDKKVTTQQLVALSLR
FRPDRVLVGEVRGGEAFDFIQALNTGHDGGMGSLHANNGRTALSRLESLAMLGIPLGSRWDLSDMRKLIADCFHYVVHMR
RTGEMRHVSEILEIQGYANNDYVIKRVF

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 38618; Mature: 38487

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANHDPYSNQLTPLEESAVKMFFESLKPIQPVLEEATVAEVMINHHNSVWVERKGRLER
CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
LDLMLEPKKLEGAIRALASSVEKSAVKGTDQGIINAGHKGLRIAAVMRPTAIDGHALSIR
HHHEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCCCCEEHHH
RHREKNLTLSDYTAMGAFSSSVARNPDDDQIIFPPDVSDDGLAHALSTMVRQRKNVLVAG
HHHCCCCEEHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCEEEEC
GTSSGKTTFLNALVGEIPHEERIISIEDTQELKLSVPNCVRLLSNPDKKVTTQQLVALSL
CCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHEECCHHHHHHHCCCCCHHHHHHHHHHHH
RFRPDRVLVGEVRGGEAFDFIQALNTGHDGGMGSLHANNGRTALSRLESLAMLGIPLGSR
EECCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCC
WDLSDMRKLIADCFHYVVHMRRTGEMRHVSEILEIQGYANNDYVIKRVF
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEC
>Mature Secondary Structure 
TANHDPYSNQLTPLEESAVKMFFESLKPIQPVLEEATVAEVMINHHNSVWVERKGRLER
CCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
LDLMLEPKKLEGAIRALASSVEKSAVKGTDQGIINAGHKGLRIAAVMRPTAIDGHALSIR
HHHEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCCCCEEHHH
RHREKNLTLSDYTAMGAFSSSVARNPDDDQIIFPPDVSDDGLAHALSTMVRQRKNVLVAG
HHHCCCCEEHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCEEEEC
GTSSGKTTFLNALVGEIPHEERIISIEDTQELKLSVPNCVRLLSNPDKKVTTQQLVALSL
CCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHEECCHHHHHHHCCCCCHHHHHHHHHHHH
RFRPDRVLVGEVRGGEAFDFIQALNTGHDGGMGSLHANNGRTALSRLESLAMLGIPLGSR
EECCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCC
WDLSDMRKLIADCFHYVVHMRRTGEMRHVSEILEIQGYANNDYVIKRVF
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]