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The map label for this gene is flhD [H]

Identifier: 187928597

GI number: 187928597

Start: 1606741

End: 1607085

Strand: Reverse

Name: flhD [H]

Synonym: Rpic_1513

Alternate gene names: 187928597

Gene position: 1607085-1606741 (Counterclockwise)

Preceding gene: 187928598

Following gene: 187928596

Centisome position: 40.76

GC content: 59.71

Gene sequence:

>345_bases
ATGCGCTCGGCATTTCCTGAATCGCCTGCAAACGACATCACCATGGAAGCGACATCGCTGCTGAGCGAGATTCGATCTCT
CAATATCGCGTATCTGCGCCTTGCTCGCAGGCTGCTAGCCACCGATCAAGCCCTGGCGACAACTGCGCTGGGTATCTCTC
AATCGATGGGCGAGGCATTGCTGACCCTCGACGAAGAGGCATGCGTGCGCATGGCACAGACCAATCTGTTTTTGTGCCGC
ATCCACTTTGATGATCGGGTGCTCGCTGCGCTGTTGGCTGGACCTCGCCTGGAGCTGTTGGAAAGCCCTGCCTCGGCGGG
CAAGGCGGCCCCCGCGATTGCGTGA

Upstream 100 bases:

>100_bases
CGCGCTCGTGCCCTGCCGGACGACCTCCGCCGTATCTTCACCTGTTGGTGGCGGTACGGCGTACGCATCGGCACAGAGGG
TTCCGCCGGCGGCGGGCCAC

Downstream 100 bases:

>100_bases
CGCCCCGGGTTCGGCGCGCAGCGGTCTACTCCACCGACATTTTTTGAAGCCGATTGCCGGTTTTTGCGAGTCACTGCCAT
TTATGGAGTGGCGACGCACT

Product: flagellar transcriptional activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MRSAFPESPANDITMEATSLLSEIRSLNIAYLRLARRLLATDQALATTALGISQSMGEALLTLDEEACVRMAQTNLFLCR
IHFDDRVLAALLAGPRLELLESPASAGKAAPAIA

Sequences:

>Translated_114_residues
MRSAFPESPANDITMEATSLLSEIRSLNIAYLRLARRLLATDQALATTALGISQSMGEALLTLDEEACVRMAQTNLFLCR
IHFDDRVLAALLAGPRLELLESPASAGKAAPAIA
>Mature_114_residues
MRSAFPESPANDITMEATSLLSEIRSLNIAYLRLARRLLATDQALATTALGISQSMGEALLTLDEEACVRMAQTNLFLCR
IHFDDRVLAALLAGPRLELLESPASAGKAAPAIA

Specific function: Transcriptional activator. Involved in the regulation of a number of genetic systems [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FlhD family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007911
- ProDom:   PD015582 [H]

Pfam domain/function: PF05247 FlhD [H]

EC number: NA

Molecular weight: Translated: 12198; Mature: 12198

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSAFPESPANDITMEATSLLSEIRSLNIAYLRLARRLLATDQALATTALGISQSMGEAL
CCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLDEEACVRMAQTNLFLCRIHFDDRVLAALLAGPRLELLESPASAGKAAPAIA
HHCCHHHHHHHHHCCEEEEEEECCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRSAFPESPANDITMEATSLLSEIRSLNIAYLRLARRLLATDQALATTALGISQSMGEAL
CCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTLDEEACVRMAQTNLFLCRIHFDDRVLAALLAGPRLELLESPASAGKAAPAIA
HHCCHHHHHHHHHCCEEEEEEECCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA