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The map label for this gene is yhjC [H]

Identifier: 187928558

GI number: 187928558

Start: 1565553

End: 1566479

Strand: Direct

Name: yhjC [H]

Synonym: Rpic_1474

Alternate gene names: 187928558

Gene position: 1565553-1566479 (Clockwise)

Preceding gene: 187928554

Following gene: 187928562

Centisome position: 39.71

GC content: 66.02

Gene sequence:

>927_bases
ATGTCTACCAACCGACTCGAAGCCATGCAGATTTTTGTGCGCGTGGCCGAACTTGCCAGCTTCACGCGTGCGGCAGAAGC
GCTGAGCATTCCCAAACCGGCCGCCTCGGTGGCGGTGCAGCAGCTGGAAACGATGCTCGGCACGCGCCTGCTGCACCGGA
CCACCCGCAAGGTGCAGCTTACGCAGGACGGCCAGACGTTCTATGAGCGCTGCCAGGATCTGCTGGCCGACATGGACGAG
CTGCAAACGATGTTCCGCCAGAGCCCGCAAGCCCTGCGCGGCCGCCTGCGTGTCGACATGCCGGTGGGCGTTGCGCGCCG
CATCGTCATCCCTGCCCTACCCGCGCTGCTCGATGCGCATCCCGAGCTGGAAATCGAACTCTCCAGCACCGACCGCCGCG
TTGACCCTGTACGCGAAGGCTTCGACTGCGTATTGCGCATCGGCGCGCTGACCGACAGCAGCCTGATCGCCCGCCCGCTC
GGTCAACTGCATCAGGTCAACTGCGCGAGCCCCGCCTACATCGCGCGCTATGGCATGCCGAGAACGCTCGACGAGCTCGA
CCGCCATCGCATCGTCCACTACGTGCAGACGCTGGGGACGAAATCGCCTGGATGGGAATACACGGTGGACGGCCGCTCCG
CCTTCCGGCCGATGAAAGGCGCGGTGACCGTCAGCTCAGCCGAGAGCTACGACGCTGCGTGCCGCGCGGGGCTGGGGATG
ATCCAGGCGCCGGTGTACGCGGGGCTGTCGTCGGCGATTGCGGACGGCACGCTCATCGACGTCATGCCCGACTTCCGGCC
CCCGCCGATGCCGGTGTCGCTGGTGTACCCGAACCGGCGGAATCTGCCGGTTCGGGTGCAAGTATTCATGAACTGGATGG
CAAACCTGTTGGCGACGCACCTGGAGACGGCATCGAGCGGGCGATAG

Upstream 100 bases:

>100_bases
TTGAACACCGTGAGAGCATGGTATTGAGCGATAAATAAAGAATAAATCTCGCTTATCCTATCGCTGTGTTTGCTCACAGA
TAACAATCAACCCACCCGCC

Downstream 100 bases:

>100_bases
TGAGCGCGGTCACTGCGCCGGCTTATCGCTACGCTTTTTCAGGTTGGCGCGCAGTGCATCGCTCATCGGCATGTCGAGGT
TTGCACCGGCCGGCGGGATG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSTNRLEAMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQLTQDGQTFYERCQDLLADMDE
LQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAHPELEIELSSTDRRVDPVREGFDCVLRIGALTDSSLIARPL
GQLHQVNCASPAYIARYGMPRTLDELDRHRIVHYVQTLGTKSPGWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLGM
IQAPVYAGLSSAIADGTLIDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWMANLLATHLETASSGR

Sequences:

>Translated_308_residues
MSTNRLEAMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQLTQDGQTFYERCQDLLADMDE
LQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAHPELEIELSSTDRRVDPVREGFDCVLRIGALTDSSLIARPL
GQLHQVNCASPAYIARYGMPRTLDELDRHRIVHYVQTLGTKSPGWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLGM
IQAPVYAGLSSAIADGTLIDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWMANLLATHLETASSGR
>Mature_307_residues
STNRLEAMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQLTQDGQTFYERCQDLLADMDEL
QTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAHPELEIELSSTDRRVDPVREGFDCVLRIGALTDSSLIARPLG
QLHQVNCASPAYIARYGMPRTLDELDRHRIVHYVQTLGTKSPGWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLGMI
QAPVYAGLSSAIADGTLIDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWMANLLATHLETASSGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=46.3333333333333, Blast_Score=283, Evalue=1e-77,
Organism=Escherichia coli, GI1786401, Length=305, Percent_Identity=33.7704918032787, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=28.5714285714286, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=33.6666666666667, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=30.7167235494881, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=28.3737024221453, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789440, Length=282, Percent_Identity=27.3049645390071, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1790011, Length=300, Percent_Identity=23.3333333333333, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789173, Length=188, Percent_Identity=25, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=246, Percent_Identity=25.609756097561, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=120, Percent_Identity=34.1666666666667, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787601, Length=123, Percent_Identity=26.0162601626016, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34085; Mature: 33954

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNRLEAMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
TQDGQTFYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAH
CCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHHHHHHHHHHCCC
PELEIELSSTDRRVDPVREGFDCVLRIGALTDSSLIARPLGQLHQVNCASPAYIARYGMP
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCC
RTLDELDRHRIVHYVQTLGTKSPGWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLGM
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCEEECCCHHHHHHHHHCCCH
IQAPVYAGLSSAIADGTLIDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWMANLLATH
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
LETASSGR
HHHHCCCC
>Mature Secondary Structure 
STNRLEAMQIFVRVAELASFTRAAEALSIPKPAASVAVQQLETMLGTRLLHRTTRKVQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE
TQDGQTFYERCQDLLADMDELQTMFRQSPQALRGRLRVDMPVGVARRIVIPALPALLDAH
CCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHHHHHHHHHHCCC
PELEIELSSTDRRVDPVREGFDCVLRIGALTDSSLIARPLGQLHQVNCASPAYIARYGMP
CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCC
RTLDELDRHRIVHYVQTLGTKSPGWEYTVDGRSAFRPMKGAVTVSSAESYDAACRAGLGM
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCEEECCCHHHHHHHHHCCCH
IQAPVYAGLSSAIADGTLIDVMPDFRPPPMPVSLVYPNRRNLPVRVQVFMNWMANLLATH
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
LETASSGR
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]