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The map label for this gene is sdsB [H]

Identifier: 187928517

GI number: 187928517

Start: 1519547

End: 1520452

Strand: Direct

Name: sdsB [H]

Synonym: Rpic_1431

Alternate gene names: 187928517

Gene position: 1519547-1520452 (Clockwise)

Preceding gene: 187928515

Following gene: 187928521

Centisome position: 38.54

GC content: 64.79

Gene sequence:

>906_bases
ATGGATTTGCGACGCCTCAGCCACGTGGTTGTCCTTGCCGACACGCTGCACTTCGCACGTGCCGCGCAAGCGGTGCATCT
GAGCCAACCCGCATTCAGCCGGAGCATCCAGGCGATCGAGGATGATCTCGGCATTCGCCTGTTTGATCGCGAAACCGGCG
ACGTGCGCCCCACTCCCGCCGGCGAATTCGTCATCGAACGCGCGCGGCGCCTGCTGTTCGAGGCGCGCTGCCTGCAACGC
GATGTTGATCTGTATCGCGACAGCCAGCTTGGCGACACGGCCTTCGGTGTCGGGCCACTGCTGACGGCCACGCTCATGCC
GCAAGCGCTGCAGGAATTGCGGCAGCAACATCCTCAGGTGGCGCTGCGCATGGAAGTCGGCAATTGGGTGCAACTGCTGG
AGAGCCTGCGCAGCGAGAGCATCGAATTCTTCGCCGCCGACGTGCGCGACATGCCGAAAGACGCCGCGCTGGATATCCAA
TTGATTGGAGGTCAGCCCCCGCACCTGTACGTGCGGGCCGGCCATCCGCTTGCAGGGCGCACGCACACGCTGCGCGAAGT
TTGGGAATACGGCATTGCCGTACCGAAGCTTCTGAGCCCGTCAAAGGTGGAACTGGCGATGCTGCTTGGCCTGCCGGCAG
GACAGGAAGCCAGCATCGCGCTGGAATGCGACAACTACGGCGTACTGAAGACGGTCGCGCTCACGACAGACACCGTCCTG
GGTGCCACGGACGCTGCGGTAAAGGCGGAGCTGGAGACCGGCACGCTGGTGCGGTTGGCAGTGACGGGGTGGCTTTCGCC
GCCGTCCAAGACTGGGATTGTGCGGCTGCACGGCAGAACTGCGTCGCCGGCGGCGCAGGCGGCCATCGCAGCCATTGTGC
GGGCCGCCCAGGACATCAACGTGTAA

Upstream 100 bases:

>100_bases
ATTGGTGTCTCCTCGCTTGTTGTGGAGACAAGCCTAGGAGGGCGATACCAATGCGTCCAATGCATAATTAACATTCATTC
AATGCAAAGTACGCAACATC

Downstream 100 bases:

>100_bases
GCACGCGGCGCATGGTCCGGTGCGGAATGCCGGCCTCCTCGAACTCCTCGCCCTCGGCCGTAAAGCCTGCGCGCGAGTAG
AACGGCATGGCGTGGGTTTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDLRRLSHVVVLADTLHFARAAQAVHLSQPAFSRSIQAIEDDLGIRLFDRETGDVRPTPAGEFVIERARRLLFEARCLQR
DVDLYRDSQLGDTAFGVGPLLTATLMPQALQELRQQHPQVALRMEVGNWVQLLESLRSESIEFFAADVRDMPKDAALDIQ
LIGGQPPHLYVRAGHPLAGRTHTLREVWEYGIAVPKLLSPSKVELAMLLGLPAGQEASIALECDNYGVLKTVALTTDTVL
GATDAAVKAELETGTLVRLAVTGWLSPPSKTGIVRLHGRTASPAAQAAIAAIVRAAQDINV

Sequences:

>Translated_301_residues
MDLRRLSHVVVLADTLHFARAAQAVHLSQPAFSRSIQAIEDDLGIRLFDRETGDVRPTPAGEFVIERARRLLFEARCLQR
DVDLYRDSQLGDTAFGVGPLLTATLMPQALQELRQQHPQVALRMEVGNWVQLLESLRSESIEFFAADVRDMPKDAALDIQ
LIGGQPPHLYVRAGHPLAGRTHTLREVWEYGIAVPKLLSPSKVELAMLLGLPAGQEASIALECDNYGVLKTVALTTDTVL
GATDAAVKAELETGTLVRLAVTGWLSPPSKTGIVRLHGRTASPAAQAAIAAIVRAAQDINV
>Mature_301_residues
MDLRRLSHVVVLADTLHFARAAQAVHLSQPAFSRSIQAIEDDLGIRLFDRETGDVRPTPAGEFVIERARRLLFEARCLQR
DVDLYRDSQLGDTAFGVGPLLTATLMPQALQELRQQHPQVALRMEVGNWVQLLESLRSESIEFFAADVRDMPKDAALDIQ
LIGGQPPHLYVRAGHPLAGRTHTLREVWEYGIAVPKLLSPSKVELAMLLGLPAGQEASIALECDNYGVLKTVALTTDTVL
GATDAAVKAELETGTLVRLAVTGWLSPPSKTGIVRLHGRTASPAAQAAIAAIVRAAQDINV

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=217, Percent_Identity=27.1889400921659, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790399, Length=181, Percent_Identity=30.3867403314917, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI87081904, Length=300, Percent_Identity=27.6666666666667, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI145693105, Length=182, Percent_Identity=25.8241758241758, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994962, Length=191, Percent_Identity=26.7015706806283, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=122, Percent_Identity=31.1475409836066, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790208, Length=136, Percent_Identity=32.3529411764706, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=96, Percent_Identity=35.4166666666667, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787530, Length=240, Percent_Identity=23.3333333333333, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32709; Mature: 32709

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLRRLSHVVVLADTLHFARAAQAVHLSQPAFSRSIQAIEDDLGIRLFDRETGDVRPTPA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
GEFVIERARRLLFEARCLQRDVDLYRDSQLGDTAFGVGPLLTATLMPQALQELRQQHPQV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCE
ALRMEVGNWVQLLESLRSESIEFFAADVRDMPKDAALDIQLIGGQPPHLYVRAGHPLAGR
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCC
THTLREVWEYGIAVPKLLSPSKVELAMLLGLPAGQEASIALECDNYGVLKTVALTTDTVL
HHHHHHHHHHCCCCCHHCCCCHHEEEEEECCCCCCCCEEEEEECCCCEEEEEEEECCHHC
GATDAAVKAELETGTLVRLAVTGWLSPPSKTGIVRLHGRTASPAAQAAIAAIVRAAQDIN
CCCCHHHEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC
V
C
>Mature Secondary Structure
MDLRRLSHVVVLADTLHFARAAQAVHLSQPAFSRSIQAIEDDLGIRLFDRETGDVRPTPA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
GEFVIERARRLLFEARCLQRDVDLYRDSQLGDTAFGVGPLLTATLMPQALQELRQQHPQV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCE
ALRMEVGNWVQLLESLRSESIEFFAADVRDMPKDAALDIQLIGGQPPHLYVRAGHPLAGR
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCC
THTLREVWEYGIAVPKLLSPSKVELAMLLGLPAGQEASIALECDNYGVLKTVALTTDTVL
HHHHHHHHHHCCCCCHHCCCCHHEEEEEECCCCCCCCEEEEEECCCCEEEEEEEECCHHC
GATDAAVKAELETGTLVRLAVTGWLSPPSKTGIVRLHGRTASPAAQAAIAAIVRAAQDIN
CCCCHHHEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]