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The map label for this gene is yfdE [H]

Identifier: 187928467

GI number: 187928467

Start: 1476681

End: 1477886

Strand: Direct

Name: yfdE [H]

Synonym: Rpic_1380

Alternate gene names: 187928467

Gene position: 1476681-1477886 (Clockwise)

Preceding gene: 187928462

Following gene: 187928468

Centisome position: 37.45

GC content: 65.01

Gene sequence:

>1206_bases
ATGGCACAGCCAGATCAACCCTTGCCGCTGCAAGGCATCAAGGTGATCGAGTTGGGGTCGCTGATCGCCGGCCCTTATGC
CGGCACGCTGCTGGCCCAGTTCGGCGCCGAGGTCATCAAGATCGAGACCCCGGTCAACGGCGACCCGCTGCGCAAATGGC
GCAAGCTGCACGATGGCACATCCCTGTGGTGGTATTCGCAGAGCCGGAACAAGAAATCGGTCACGCTCAACCTCAAGTCG
GAACGCGCTCAGCAGATCGTCCGCGATCTGGTGAAAGATGCCGACGTCGTGATCGAGAACTTCCGCCCGGGTCTGATGGA
AAGCTGGGGACTGGGCTGGGAGCAACTCTCGGCCATCAACCCGAAGCTGGTGATGGTGCGCATTTCGGGTTACGGGCAGA
GCGGCCCGTACCGCGAGCGGCCCGGATTTGCCGCGATTGCCGAGTCGATGGGTGGCCTGCGCTACCTGTCTGGCTACGCC
GATCGGCCTCCGGTACGCGTGGGCGTGAGCCTGGGCGATTCGCTGGCGTCCCTCTACGGCGTGATTGGCGCGCTGCTGGC
CATGCATCACGTCAAGGCCAATCGCGGCACCGGGCAGTTCATCGACGTGGCGCTGTACGAAGCGGTGTTCGGGATCATGG
AAAGCCTGATCCCCGAGTATGCGATGTTCGAGCACGTGCGTGAGCGCACCGGTTCAAGCCTGCCGGGCATTTCGCCCTCC
AACACCTACCTGTGTGCCGACGGCAACTACGTGATCATCGCGGGCAACGGCGACGGCATCTTCAAGCGCCTGATGCAGGC
CATCGGCCTGCCGGAGTTTGCGGAGGACGCGCGCTTTGCCGACAACGCCAAGCGCGTCCAGCACAACGATCTGCTCGACG
GGGTGATCGGCGAATGGACCGCGCGTCATCCGATCGACGCTGTGCTGCAGGTGCTGGAGCAAGCCGATGTGCCGAGCGGG
CGCATCTATACCGCCGCCGACATCGCACGCGATCCGCAATATGCGGCGCGTGGCATGATCGAGCGCCACACCTTGCCCGA
TGGCCAGCCTATCGACTTGCCGGGCATCGTGCCCAAGCTGTCCGCCACGCCGGGCAGCACGCGCTGGGTCGGCCCCGAGC
TGGGTGAGCACACCGACGAGGTGCTGCACGCGCTCGGACTCGACGCTGCCGCGCTCGACAGCCTGCGCGCCGAAGGCATC
ATCTGA

Upstream 100 bases:

>100_bases
ATTATTTAGCGTTTTTTGGTCTGGCGAGAAGTGTCCATGATGCATTCATCGAGCGCGGCAATGTTGTGCGCTGCACGATA
TGGAGTAAAGAGGAGACAAC

Downstream 100 bases:

>100_bases
CAGCGGGATCGCACATGACACCTCAGACCTTGTTCGCAAAGCTGTGGCAACGCCACGCCGTGCGTGATACCGACGATGGC
CACACGCTGCTTTACATCGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MAQPDQPLPLQGIKVIELGSLIAGPYAGTLLAQFGAEVIKIETPVNGDPLRKWRKLHDGTSLWWYSQSRNKKSVTLNLKS
ERAQQIVRDLVKDADVVIENFRPGLMESWGLGWEQLSAINPKLVMVRISGYGQSGPYRERPGFAAIAESMGGLRYLSGYA
DRPPVRVGVSLGDSLASLYGVIGALLAMHHVKANRGTGQFIDVALYEAVFGIMESLIPEYAMFEHVRERTGSSLPGISPS
NTYLCADGNYVIIAGNGDGIFKRLMQAIGLPEFAEDARFADNAKRVQHNDLLDGVIGEWTARHPIDAVLQVLEQADVPSG
RIYTAADIARDPQYAARGMIERHTLPDGQPIDLPGIVPKLSATPGSTRWVGPELGEHTDEVLHALGLDAAALDSLRAEGI
I

Sequences:

>Translated_401_residues
MAQPDQPLPLQGIKVIELGSLIAGPYAGTLLAQFGAEVIKIETPVNGDPLRKWRKLHDGTSLWWYSQSRNKKSVTLNLKS
ERAQQIVRDLVKDADVVIENFRPGLMESWGLGWEQLSAINPKLVMVRISGYGQSGPYRERPGFAAIAESMGGLRYLSGYA
DRPPVRVGVSLGDSLASLYGVIGALLAMHHVKANRGTGQFIDVALYEAVFGIMESLIPEYAMFEHVRERTGSSLPGISPS
NTYLCADGNYVIIAGNGDGIFKRLMQAIGLPEFAEDARFADNAKRVQHNDLLDGVIGEWTARHPIDAVLQVLEQADVPSG
RIYTAADIARDPQYAARGMIERHTLPDGQPIDLPGIVPKLSATPGSTRWVGPELGEHTDEVLHALGLDAAALDSLRAEGI
I
>Mature_400_residues
AQPDQPLPLQGIKVIELGSLIAGPYAGTLLAQFGAEVIKIETPVNGDPLRKWRKLHDGTSLWWYSQSRNKKSVTLNLKSE
RAQQIVRDLVKDADVVIENFRPGLMESWGLGWEQLSAINPKLVMVRISGYGQSGPYRERPGFAAIAESMGGLRYLSGYAD
RPPVRVGVSLGDSLASLYGVIGALLAMHHVKANRGTGQFIDVALYEAVFGIMESLIPEYAMFEHVRERTGSSLPGISPSN
TYLCADGNYVIIAGNGDGIFKRLMQAIGLPEFAEDARFADNAKRVQHNDLLDGVIGEWTARHPIDAVLQVLEQADVPSGR
IYTAADIARDPQYAARGMIERHTLPDGQPIDLPGIVPKLSATPGSTRWVGPELGEHTDEVLHALGLDAAALDSLRAEGII

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=31.6455696202532, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI300863124, Length=421, Percent_Identity=30.6413301662708, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI300863126, Length=395, Percent_Identity=29.1139240506329, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI13376042, Length=421, Percent_Identity=27.5534441805226, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=26.5, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=26.25, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=29.5454545454545, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=30.6451612903226, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI266458395, Length=130, Percent_Identity=39.2307692307692, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI42822893, Length=130, Percent_Identity=39.2307692307692, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=33.6182336182336, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1788717, Length=422, Percent_Identity=27.7251184834123, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1786222, Length=404, Percent_Identity=27.7227722772277, Blast_Score=131, Evalue=8e-32,
Organism=Caenorhabditis elegans, GI115535051, Length=301, Percent_Identity=27.906976744186, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=267, Percent_Identity=26.2172284644195, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24648431, Length=401, Percent_Identity=32.1695760598504, Blast_Score=210, Evalue=1e-54,
Organism=Drosophila melanogaster, GI24585488, Length=371, Percent_Identity=29.1105121293801, Blast_Score=124, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43563; Mature: 43432

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPDQPLPLQGIKVIELGSLIAGPYAGTLLAQFGAEVIKIETPVNGDPLRKWRKLHDGT
CCCCCCCCCCCCEEEEEHHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCC
SLWWYSQSRNKKSVTLNLKSERAQQIVRDLVKDADVVIENFRPGLMESWGLGWEQLSAIN
EEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHCCC
PKLVMVRISGYGQSGPYRERPGFAAIAESMGGLRYLSGYADRPPVRVGVSLGDSLASLYG
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCEEEEHHHHHHHHHHHH
VIGALLAMHHVKANRGTGQFIDVALYEAVFGIMESLIPEYAMFEHVRERTGSSLPGISPS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
NTYLCADGNYVIIAGNGDGIFKRLMQAIGLPEFAEDARFADNAKRVQHNDLLDGVIGEWT
CEEEEECCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ARHPIDAVLQVLEQADVPSGRIYTAADIARDPQYAARGMIERHTLPDGQPIDLPGIVPKL
CCCCHHHHHHHHHHCCCCCCCEEEHHHHHCCHHHHHHCHHHHCCCCCCCCCCCCCCCCCC
SATPGSTRWVGPELGEHTDEVLHALGLDAAALDSLRAEGII
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
AQPDQPLPLQGIKVIELGSLIAGPYAGTLLAQFGAEVIKIETPVNGDPLRKWRKLHDGT
CCCCCCCCCCCEEEEEHHHHHHCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCC
SLWWYSQSRNKKSVTLNLKSERAQQIVRDLVKDADVVIENFRPGLMESWGLGWEQLSAIN
EEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHCCC
PKLVMVRISGYGQSGPYRERPGFAAIAESMGGLRYLSGYADRPPVRVGVSLGDSLASLYG
CEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCEEEEHHHHHHHHHHHH
VIGALLAMHHVKANRGTGQFIDVALYEAVFGIMESLIPEYAMFEHVRERTGSSLPGISPS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
NTYLCADGNYVIIAGNGDGIFKRLMQAIGLPEFAEDARFADNAKRVQHNDLLDGVIGEWT
CEEEEECCCEEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ARHPIDAVLQVLEQADVPSGRIYTAADIARDPQYAARGMIERHTLPDGQPIDLPGIVPKL
CCCCHHHHHHHHHHCCCCCCCEEEHHHHHCCHHHHHHCHHHHCCCCCCCCCCCCCCCCCC
SATPGSTRWVGPELGEHTDEVLHALGLDAAALDSLRAEGII
CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]