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The map label for this gene is omp85 [H]

Identifier: 187928375

GI number: 187928375

Start: 1381663

End: 1383960

Strand: Direct

Name: omp85 [H]

Synonym: Rpic_1286

Alternate gene names: 187928375

Gene position: 1381663-1383960 (Clockwise)

Preceding gene: 187928374

Following gene: 187928376

Centisome position: 35.04

GC content: 60.31

Gene sequence:

>2298_bases
TTGATCAGACAACATCGCTTCCCGCTCAGCGTGCTGGCGGCTTCCGTGCTGACCGTCACTGCCGGTCAGGCTCATGCAGT
GGAGCCGTTCGTCGTCAAGGACATTCGCGTGGAGGGTGTGCAGCGCGTCGAGCCGGGCACCGTGTTCGGCTATTTGCCCG
TGAAGGTGGGTGAGACCTTCACCGACGAGAAGGGCGCCGAATCGATTCGCGCGCTCTACAACACCGGCTTCTTCAAGGAC
GTGCAGATCCGCTCCGAAGGCAACGTGCTGGTGGTGCGCGTGGAAGAGCGTCCTGCGATCTCGCAGCTCGAGTTCATCGG
CTTCAAGGAGTTCGACAAGGAGGCGCTGCGTCGTACGCTGCGTGGCGTGGGTGTGGCTGAGGCCCGTTACTACGACAAGT
CGCTCATCGACCGCGCCGAGCAGGAAATCAAGCGCCAGTATGTTTCGCGCGGCTATTACGCTGCCGAGGTGACGACCACG
GTTACGCCGGTCGACGCCAACCGTGTGTCGATCACGTTTACGGTTGACGAAGGCCCGACCGCCAAGATTCGCCAGATCAA
TATCGTCGGCAACAAGGCCTTCAAGGAAGGTGACCTGCGCGACGAGATGCAACTGTCCACGCCGAACTGGCTGTCGTGGT
ACACCAAGAACGATCTGTACTCGAAGCAGAAACTCACGGCCGACCTGGAAGCGCTGCGCTCGTTCTATTTGGATCGCGGT
TACCTGGAATTCGCAATCGAGTCGACCCAGGTGTCGATCACGCCGGACAAGAAGGACATCTACCTGACGCTGAACATCCA
CGAGGGTGAGCAGTACAAGGTGTCGGACATCAAGCTGACCGGTGAGCTGCTGGGCAAGCAGGCCGAGATGGAGAAGCTCA
TCAAGCTCAAGCAGGGCGATGTCTTCTCGTCGGCCAAGCTCTCGTCGACGACCAAGTCGATTACCGATCTGCTCGGCACG
TATGGCTACGCTTTCGCCACCATCAACCCGCAGCCGCAGATCAACCAGAAGGACCGCACGGTTGCACTCACGCTGGTGGT
CGATCCGGGCCGCCGTGTGTACGTGCGTCGCGTGAACGTTGTCGGCAACAGCAAGACCCGCGACGAAGTCGTGCGCCGCG
AAATGCGCCAGATGGAAGCCTCGTGGTTCGACGGCGAGAAGCTGCAGCTTTCGCAGAACCGCGTGAACCGCACGGGTTAC
TTCACCGATGCGAACATCACGACGGAAGACGTGCCCGGCACAACCGATCAGGTCGATGTAAACGTCAACGTGACGGAAAA
GCCGACAGGCCAGATCAACCTGGGCGTGGGCTTCTCGTCGACCGACAAGCTGGTGCTGTCGGCCGGTATCCGTCAGGACA
ACGTGTTCGGCTCCGGTACGAGCCTCGGCCTCGATGTGAACACTTCCAAGTCGAACCGCACCATTGCAGTGACGCAGTTC
GATCCGTACTTCACGGTGGATGGCATCAGCCGTTCGACCGAACTGTACTACCGCACGTACCGTCCGCTGTACTACACGGG
TGACCAGGACTACCGCGTCGTGCAGCAGGGCGGCAACGTCAAGTTCGGCGTGCCGTTCTCTGAAACCGATACCGTCTTCT
TCGGCATCGGCTACGAGCGCACGACCATCGACGTGACGACCAACACGCCGCTGGCCTACCAGAACTACGTCGCGAAGAAC
GGCCGCATCACCAACAACTTTCCGATCACCATCGGCTGGTCGAAGGACCAGCGTGACAGCGCCTTGGTGCCGACGCGTGG
TCGCTACCAGCAGGCCAACCTGGAGTTCGGTATCCCGGGCGGCGACCTGCAGTACTTCCGCGCGTACTATCAGCACCAGT
ATTTCTACCCGCTGTCGAAGTCGTTCACGATGGCGTTCAACAACGAAATTGGGTACGGCCACGGTTACGGTGGCAAGGAC
TTCCCGGTCTTCAAGAACTACTACGCCGGCGGTATCGGTTCGGTGCGCGGTTACGAAACCAGCACGCTGGGCCCGCGCGA
CGCCAATGGCGTGGCCATCGGTGGCGCCAGCAAGTTCGTTGGCAACGTGGAATTCATCTTCCCGCTGCCGGGTTCGGGCG
TGGACCGCACCGTTCGTCTGTTCACGTTCTTCGACTACGGTAACGTGTTCGCCGAGGGTCAGCCTTACAAGCTGGGCGAC
ATGCGCTACTCGACCGGTTTCGGTCTGTCGTGGCTGTCGCCGATCGGCCCGCTCAAGATCAGCATGGGCTTCCCGATCAA
GCGGAAGACCCAAGATCAAACGCAACGCTTCCAGTTCCAGATCGGGACTGCATTCTAA

Upstream 100 bases:

>100_bases
GGTCGGTAAGCCACATCGTTGCCACCGGCGTGAGCGGGCAACTCAGGGTTTTGAAAACACTCAGAAGTGGATTCCGATTG
AATCCAACTAGGGGATTAGA

Downstream 100 bases:

>100_bases
TGACTGCATTCATCATGAAATCCACGCGCATCACGTTGTCCCGCATGGGCGTGTCCGCTGCTTTCGCCGCACTTGCCGCA
GCCAGCTTTGCGCTGCCGGC

Product: outer membrane protein assembly complex, YaeT protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 765; Mature: 765

Protein sequence:

>765_residues
MIRQHRFPLSVLAASVLTVTAGQAHAVEPFVVKDIRVEGVQRVEPGTVFGYLPVKVGETFTDEKGAESIRALYNTGFFKD
VQIRSEGNVLVVRVEERPAISQLEFIGFKEFDKEALRRTLRGVGVAEARYYDKSLIDRAEQEIKRQYVSRGYYAAEVTTT
VTPVDANRVSITFTVDEGPTAKIRQINIVGNKAFKEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLGKQAEMEKLIKLKQGDVFSSAKLSSTTKSITDLLGT
YGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNVVGNSKTRDEVVRREMRQMEASWFDGEKLQLSQNRVNRTGY
FTDANITTEDVPGTTDQVDVNVNVTEKPTGQINLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTIAVTQF
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRVVQQGGNVKFGVPFSETDTVFFGIGYERTTIDVTTNTPLAYQNYVAKN
GRITNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPGGDLQYFRAYYQHQYFYPLSKSFTMAFNNEIGYGHGYGGKD
FPVFKNYYAGGIGSVRGYETSTLGPRDANGVAIGGASKFVGNVEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPYKLGD
MRYSTGFGLSWLSPIGPLKISMGFPIKRKTQDQTQRFQFQIGTAF

Sequences:

>Translated_765_residues
MIRQHRFPLSVLAASVLTVTAGQAHAVEPFVVKDIRVEGVQRVEPGTVFGYLPVKVGETFTDEKGAESIRALYNTGFFKD
VQIRSEGNVLVVRVEERPAISQLEFIGFKEFDKEALRRTLRGVGVAEARYYDKSLIDRAEQEIKRQYVSRGYYAAEVTTT
VTPVDANRVSITFTVDEGPTAKIRQINIVGNKAFKEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLGKQAEMEKLIKLKQGDVFSSAKLSSTTKSITDLLGT
YGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNVVGNSKTRDEVVRREMRQMEASWFDGEKLQLSQNRVNRTGY
FTDANITTEDVPGTTDQVDVNVNVTEKPTGQINLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTIAVTQF
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRVVQQGGNVKFGVPFSETDTVFFGIGYERTTIDVTTNTPLAYQNYVAKN
GRITNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPGGDLQYFRAYYQHQYFYPLSKSFTMAFNNEIGYGHGYGGKD
FPVFKNYYAGGIGSVRGYETSTLGPRDANGVAIGGASKFVGNVEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPYKLGD
MRYSTGFGLSWLSPIGPLKISMGFPIKRKTQDQTQRFQFQIGTAF
>Mature_765_residues
MIRQHRFPLSVLAASVLTVTAGQAHAVEPFVVKDIRVEGVQRVEPGTVFGYLPVKVGETFTDEKGAESIRALYNTGFFKD
VQIRSEGNVLVVRVEERPAISQLEFIGFKEFDKEALRRTLRGVGVAEARYYDKSLIDRAEQEIKRQYVSRGYYAAEVTTT
VTPVDANRVSITFTVDEGPTAKIRQINIVGNKAFKEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLGKQAEMEKLIKLKQGDVFSSAKLSSTTKSITDLLGT
YGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNVVGNSKTRDEVVRREMRQMEASWFDGEKLQLSQNRVNRTGY
FTDANITTEDVPGTTDQVDVNVNVTEKPTGQINLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTIAVTQF
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRVVQQGGNVKFGVPFSETDTVFFGIGYERTTIDVTTNTPLAYQNYVAKN
GRITNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPGGDLQYFRAYYQHQYFYPLSKSFTMAFNNEIGYGHGYGGKD
FPVFKNYYAGGIGSVRGYETSTLGPRDANGVAIGGASKFVGNVEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPYKLGD
MRYSTGFGLSWLSPIGPLKISMGFPIKRKTQDQTQRFQFQIGTAF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=811, Percent_Identity=35.3884093711467, Blast_Score=493, Evalue=1e-140,
Organism=Escherichia coli, GI1790666, Length=406, Percent_Identity=21.4285714285714, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 85847; Mature: 85847

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRQHRFPLSVLAASVLTVTAGQAHAVEPFVVKDIRVEGVQRVEPGTVFGYLPVKVGETF
CCCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEEEECCCEECCCCEEEEEEEEECCCCC
TDEKGAESIRALYNTGFFKDVQIRSEGNVLVVRVEERPAISQLEFIGFKEFDKEALRRTL
CCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCEEECCCHHHHHHHHHHHH
RGVGVAEARYYDKSLIDRAEQEIKRQYVSRGYYAAEVTTTVTPVDANRVSITFTVDEGPT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEEEEEEEECCCCC
AKIRQINIVGNKAFKEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
CEEEEEEEECCCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLGKQAEMEKLIKLKQGD
EEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEHHHHCCHHHHHHHHHHCCCC
VFSSAKLSSTTKSITDLLGTYGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNV
CCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEE
VGNSKTRDEVVRREMRQMEASWFDGEKLQLSQNRVNRTGYFTDANITTEDVPGTTDQVDV
ECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCEECCCCCCCCEEEE
NVNVTEKPTGQINLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTIAVTQF
EEEECCCCCCEEEEECCCCCCCCEEEECCCCCCCEECCCCEEEEEEECCCCCCEEEEEEC
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRVVQQGGNVKFGVPFSETDTVFFGIGYER
CCEEEECCCCCCEEEEEEEECCEEEECCCCEEEEECCCCEEEECCCCCCCEEEEEECCEE
TTIDVTTNTPLAYQNYVAKNGRITNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPG
EEEEEECCCCCHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCCCEECCEEECCCC
GDLQYFRAYYQHQYFYPLSKSFTMAFNNEIGYGHGYGGKDFPVFKNYYAGGIGSVRGYET
CCHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
STLGPRDANGVAIGGASKFVGNVEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPYKLGD
CCCCCCCCCCEEECCHHHHCCCEEEEEECCCCCCCCEEEEEEEEECCCEEECCCCEEECC
MRYSTGFGLSWLSPIGPLKISMGFPIKRKTQDQTQRFQFQIGTAF
EEECCCCCCHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MIRQHRFPLSVLAASVLTVTAGQAHAVEPFVVKDIRVEGVQRVEPGTVFGYLPVKVGETF
CCCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEEEECCCEECCCCEEEEEEEEECCCCC
TDEKGAESIRALYNTGFFKDVQIRSEGNVLVVRVEERPAISQLEFIGFKEFDKEALRRTL
CCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCCCCCCEEECCCHHHHHHHHHHHH
RGVGVAEARYYDKSLIDRAEQEIKRQYVSRGYYAAEVTTTVTPVDANRVSITFTVDEGPT
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEEEEEEEECCCCC
AKIRQINIVGNKAFKEGDLRDEMQLSTPNWLSWYTKNDLYSKQKLTADLEALRSFYLDRG
CEEEEEEEECCCCCCCCCCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
YLEFAIESTQVSITPDKKDIYLTLNIHEGEQYKVSDIKLTGELLGKQAEMEKLIKLKQGD
EEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEHHHHCCHHHHHHHHHHCCCC
VFSSAKLSSTTKSITDLLGTYGYAFATINPQPQINQKDRTVALTLVVDPGRRVYVRRVNV
CCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEE
VGNSKTRDEVVRREMRQMEASWFDGEKLQLSQNRVNRTGYFTDANITTEDVPGTTDQVDV
ECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCEECCCCCCCCEEEE
NVNVTEKPTGQINLGVGFSSTDKLVLSAGIRQDNVFGSGTSLGLDVNTSKSNRTIAVTQF
EEEECCCCCCEEEEECCCCCCCCEEEECCCCCCCEECCCCEEEEEEECCCCCCEEEEEEC
DPYFTVDGISRSTELYYRTYRPLYYTGDQDYRVVQQGGNVKFGVPFSETDTVFFGIGYER
CCEEEECCCCCCEEEEEEEECCEEEECCCCEEEEECCCCEEEECCCCCCCEEEEEECCEE
TTIDVTTNTPLAYQNYVAKNGRITNNFPITIGWSKDQRDSALVPTRGRYQQANLEFGIPG
EEEEEECCCCCHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCCCEECCEEECCCC
GDLQYFRAYYQHQYFYPLSKSFTMAFNNEIGYGHGYGGKDFPVFKNYYAGGIGSVRGYET
CCHHHHHHHHCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
STLGPRDANGVAIGGASKFVGNVEFIFPLPGSGVDRTVRLFTFFDYGNVFAEGQPYKLGD
CCCCCCCCCCEEECCHHHHCCCEEEEEECCCCCCCCEEEEEEEEECCCEEECCCCEEECC
MRYSTGFGLSWLSPIGPLKISMGFPIKRKTQDQTQRFQFQIGTAF
EEECCCCCCHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]