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The map label for this gene is rraA [C]

Identifier: 187928318

GI number: 187928318

Start: 1317854

End: 1318351

Strand: Direct

Name: rraA [C]

Synonym: Rpic_1229

Alternate gene names: 187928318

Gene position: 1317854-1318351 (Clockwise)

Preceding gene: 187928317

Following gene: 187928319

Centisome position: 33.43

GC content: 63.65

Gene sequence:

>498_bases
ATGACGATGATTCCCGTAACTGACTTGTGCGACATGCACGAAGACAAGCTGGTGTATGGAAGCCTGCGCGTGCTCACGCC
GGTGTTCCGCAGCTTCGGCAAGCGCGCCGCGTTTGCCGGCCCGGCTTCCACGCTCAAGGTGTTTGAAGACAACGGCCTGG
TACGCGCCGCGCTGGAAGAACAGGGCGCCGGCCGCGTGCTGGTGATCGACGGGGGTGGCTCGCTGCGCTGTGCGCTGGTG
GGCGGCAACCTCGGCAAGCTGGCCGAAGAGAACGGTTGGGAAGGGATTCTGCTCAACGGCTGCGTGCGCGATACGCGCGA
GCTGGCCGAATGCAACGTCGGCATTCACGCCCTGGCCGTGCATCCGCGCAAGAGCATCAAGAAAAACGCCGGGCAGCGCG
AAGTCGGCGTGCAGATGCCGGGCGCTTACATCCAGTCTGGCGAGTGGATCTATGCCGATGAAGACGGCGTGCTGGTTTCG
CAGGACATGCTCGAATGA

Upstream 100 bases:

>100_bases
ATCATCAGCCCACGCGCGACGATCGATTCGTTGCATGCACAGTCACGCAGTTGATTCCGCTTTCATTTCTTGTTTTCGCC
AACGCCCATCCACCATTGCC

Downstream 100 bases:

>100_bases
CCCGCGCCAATGCCATCCACGTATTCGTCTACGGCACGCTGCGGGCCGGTGAGGCGAATGATTTGCGCGTTGCCGCGGCC
AAGCGTGGCATTCCCGAACC

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MTMIPVTDLCDMHEDKLVYGSLRVLTPVFRSFGKRAAFAGPASTLKVFEDNGLVRAALEEQGAGRVLVIDGGGSLRCALV
GGNLGKLAEENGWEGILLNGCVRDTRELAECNVGIHALAVHPRKSIKKNAGQREVGVQMPGAYIQSGEWIYADEDGVLVS
QDMLE

Sequences:

>Translated_165_residues
MTMIPVTDLCDMHEDKLVYGSLRVLTPVFRSFGKRAAFAGPASTLKVFEDNGLVRAALEEQGAGRVLVIDGGGSLRCALV
GGNLGKLAEENGWEGILLNGCVRDTRELAECNVGIHALAVHPRKSIKKNAGQREVGVQMPGAYIQSGEWIYADEDGVLVS
QDMLE
>Mature_164_residues
TMIPVTDLCDMHEDKLVYGSLRVLTPVFRSFGKRAAFAGPASTLKVFEDNGLVRAALEEQGAGRVLVIDGGGSLRCALVG
GNLGKLAEENGWEGILLNGCVRDTRELAECNVGIHALAVHPRKSIKKNAGQREVGVQMPGAYIQSGEWIYADEDGVLVSQ
DMLE

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=159, Percent_Identity=42.1383647798742, Blast_Score=131, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17728; Mature: 17596

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMIPVTDLCDMHEDKLVYGSLRVLTPVFRSFGKRAAFAGPASTLKVFEDNGLVRAALEE
CCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEEHH
QGAGRVLVIDGGGSLRCALVGGNLGKLAEENGWEGILLNGCVRDTRELAECNVGIHALAV
CCCCEEEEEECCCCEEEEEECCCCHHHHHCCCCCEEEECCHHHHHHHHHHCCCCEEEEEE
HPRKSIKKNAGQREVGVQMPGAYIQSGEWIYADEDGVLVSQDMLE
CCHHHHHHCCCCCCCCEECCCCEEECCCEEEECCCCEEECCCCCC
>Mature Secondary Structure 
TMIPVTDLCDMHEDKLVYGSLRVLTPVFRSFGKRAAFAGPASTLKVFEDNGLVRAALEE
CCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEEHH
QGAGRVLVIDGGGSLRCALVGGNLGKLAEENGWEGILLNGCVRDTRELAECNVGIHALAV
CCCCEEEEEECCCCEEEEEECCCCHHHHHCCCCCEEEECCHHHHHHHHHHCCCCEEEEEE
HPRKSIKKNAGQREVGVQMPGAYIQSGEWIYADEDGVLVSQDMLE
CCHHHHHHCCCCCCCCEECCCCEEECCCEEEECCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]