| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is 187928298
Identifier: 187928298
GI number: 187928298
Start: 1295507
End: 1297684
Strand: Direct
Name: 187928298
Synonym: Rpic_1209
Alternate gene names: NA
Gene position: 1295507-1297684 (Clockwise)
Preceding gene: 187928297
Following gene: 187928299
Centisome position: 32.86
GC content: 67.49
Gene sequence:
>2178_bases ATGAAACCAACCCGAACGGCGCGCCTGCGAAGGCACGTCTCGCCAAGCAACCTCATCGCTGTCGGAGCCGTGCTGCTGGC CGGCTGCGGCGTGTTGAGCGCCTGCGGCGGCAGCAATGACGGCAACAACGTGCCGGGCAATACCAAGCCCGCCTTTGCCG GCAAGGTGACCATCAACCGGTACGACGGCATATCAGACGACCTGCTGACCGCCGGCCTGGGCGCAAGCGGCCTGGCTTCG GCCACTGCGCCCGCCATCGCCAACCCCACGGCGCCCACGGCAGCCGAGCTGCGCCGCCTGGCGATCTACGCCAACTACCG TGCGCTGGTCGACACGGCGGCCAAGGGCGGCTACGGCACGCTCTATGGCCCGAACGTCGATGCCAGCGGCAACGTCACGC AGGGCTCCGGCATGATCCCCGGCACCGAATACGTGACGTACTCCGACGACGGCACAGGGCAGCAGAACGTCGTGCTGCTC GTGCAGATTCCGGACAGCTTCGACGTCAACAACCCCTGCATCATCACCGCCACCTCGTCGGGCTCGCGCGGCATCTATGG CGCGATTTCCACCGGCGAGTGGGGCCTCAAGCGCAAGTGCGCCGTTGCTTATACCGACAAGGGCACCGGCGCCGGGCCGC ACGACCTGGCTACGGACACCGTCGCCCTGCAGGACGGCACGCGCACCACGCGCAGCGCAGCCGGGTCGAACGCGCACTTT GCTGCGCCGCTCACCAGCAGCCAGTTGGCTGCCTTCAATTCGGCCACGCCGAACCGGCTGGCGTTCAAGCATGCGCATTC GCAGCGCAACCCAGAGAAGGATTGGGGCTTGTTCACGCTGCAGGCCGTGCAGTTCGCGTTCTGGGCGATCAACGACAAGA TCGCTGGGACGAGCGGTGCGCTGGTCGGCAGCGCACTGCCGGTCCGTCCGGACAACACCATCGTCATCGCGTCGAGCATC TCCAACGGCGGCGGGGCGGCCATCGCGGCGGCAGAGCAGGACACCGGCGGGTGGATCGACGGGGTGGCCGTCGGCGAGCC CGGCCTGAACCTGCCGCCCAACACCGGTGTGCAGGTCGTGCGCGGCGGCACCACGCTGCCGACGACTGGCAAACCGCTGT TCGACTACGTGAGCTATGCCAATGTATTCCGGCTGTGCGCGGCGTCGTCTGCGAGCGTTGCCACCGCACCCGCGCAGGCG TTCTTTACGAGCCTCACGACGTTCCCGGCAGGCGTGCAGGCCAATCGCTGCGCCGCGCTCAAGGCGGCTGGGCTGCTGAC GTCCACCACGGCGGCTGCCCAGGCCGACGAAGCGCTGCAGAAGATGCGCACCTACGGCTGGGAACCGGAGTCGGACCTGG TGCATGCGTCAATGTCGTTCTACGAGATCGACCCATCGGTGTCGACCACATTTGGCAACGCGCTTTCTCGCGCCAGCGTG ACCGACAACCTGTGCGGGCTGAGTTTCGCGGCAACCGACGCGTCGTTCCATCCGACGGCGGTGAACGCCACGGCGCTTGC GCAGATGGCGGCGGTTGGCAACGGCATTCCGCCCACCTCCGGCGTGCAACTCGTCAACAACAACGCCCAGGGCGGCCCGA CGCGCAGCAACCAATCGGTCGACTCCACCGGCACGCAGGCCGCCAACCTCGATGGCGCGCTTTGCCTGCGCAACCTGTTG ACGGGCGCCGATGCCGCTTCACAGTCGCTGCAGGCCGGCATCAGCCAGACGTTGCGCACCGGCAACCTGCAGGGCAAGCC GGCGTTGATCGTGCAGGGCCGCAACGACGCGCTGCTGCCGGTCAACCATGGTTCGCGGCCTTACCTGGGGCTGAACGCCA GGGTGGAGGGCGGCTCGAGCAAGCTGTCGTATATCGAGGTGATGAACGCGCAGCATTTCGATGGCTTCATCGACCTCGTG CCTGGTTACGACACGCTCTTCGTGCCGCTGGTGCTGTATGAGCAGCGCGCGCTGGACGCCATGTACGCCAACCTGAAGAA CGGCACGCCGCTGCCGCCTTCACAGGTGGTGCGCACCACTCCGCGCGGTGGTACGCCCGGTGCTGCACCGGCCATCAACG CGGCCAACGTGCCGAACTTCACGAGCACACCGGCCGCGGGCGACCGCATCTCGGTGACTGTGTCGGGCGGCGTTGCGACG GTATCGGTGCCCAACTGA
Upstream 100 bases:
>100_bases TCACATACTGGTAGTGCCTGCGGTGGCGTAGGGACGTGCAGTATCGAGGGCCGCCGTGGGTTGCTTTGTGTTGTTCCATC CATAACGAGAAGGAGACGCA
Downstream 100 bases:
>100_bases TGCGATAGCCAGGACGGTATTGACGCACTTGGGACGGCGGCGTGGCCTGCAGGCGCGCCGCCGTTTGTTCTGGCGCAAAT CTGCGTCAAAACTCGCGTTT
Product: putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane
Products: NA
Alternate protein names: 3HB-oligomer hydrolase; 3HBOH; Extracellular 3HB-oligomer hydrolase; e3HBOH [H]
Number of amino acids: Translated: 725; Mature: 725
Protein sequence:
>725_residues MKPTRTARLRRHVSPSNLIAVGAVLLAGCGVLSACGGSNDGNNVPGNTKPAFAGKVTINRYDGISDDLLTAGLGASGLAS ATAPAIANPTAPTAAELRRLAIYANYRALVDTAAKGGYGTLYGPNVDASGNVTQGSGMIPGTEYVTYSDDGTGQQNVVLL VQIPDSFDVNNPCIITATSSGSRGIYGAISTGEWGLKRKCAVAYTDKGTGAGPHDLATDTVALQDGTRTTRSAAGSNAHF AAPLTSSQLAAFNSATPNRLAFKHAHSQRNPEKDWGLFTLQAVQFAFWAINDKIAGTSGALVGSALPVRPDNTIVIASSI SNGGGAAIAAAEQDTGGWIDGVAVGEPGLNLPPNTGVQVVRGGTTLPTTGKPLFDYVSYANVFRLCAASSASVATAPAQA FFTSLTTFPAGVQANRCAALKAAGLLTSTTAAAQADEALQKMRTYGWEPESDLVHASMSFYEIDPSVSTTFGNALSRASV TDNLCGLSFAATDASFHPTAVNATALAQMAAVGNGIPPTSGVQLVNNNAQGGPTRSNQSVDSTGTQAANLDGALCLRNLL TGADAASQSLQAGISQTLRTGNLQGKPALIVQGRNDALLPVNHGSRPYLGLNARVEGGSSKLSYIEVMNAQHFDGFIDLV PGYDTLFVPLVLYEQRALDAMYANLKNGTPLPPSQVVRTTPRGGTPGAAPAINAANVPNFTSTPAAGDRISVTVSGGVAT VSVPN
Sequences:
>Translated_725_residues MKPTRTARLRRHVSPSNLIAVGAVLLAGCGVLSACGGSNDGNNVPGNTKPAFAGKVTINRYDGISDDLLTAGLGASGLAS ATAPAIANPTAPTAAELRRLAIYANYRALVDTAAKGGYGTLYGPNVDASGNVTQGSGMIPGTEYVTYSDDGTGQQNVVLL VQIPDSFDVNNPCIITATSSGSRGIYGAISTGEWGLKRKCAVAYTDKGTGAGPHDLATDTVALQDGTRTTRSAAGSNAHF AAPLTSSQLAAFNSATPNRLAFKHAHSQRNPEKDWGLFTLQAVQFAFWAINDKIAGTSGALVGSALPVRPDNTIVIASSI SNGGGAAIAAAEQDTGGWIDGVAVGEPGLNLPPNTGVQVVRGGTTLPTTGKPLFDYVSYANVFRLCAASSASVATAPAQA FFTSLTTFPAGVQANRCAALKAAGLLTSTTAAAQADEALQKMRTYGWEPESDLVHASMSFYEIDPSVSTTFGNALSRASV TDNLCGLSFAATDASFHPTAVNATALAQMAAVGNGIPPTSGVQLVNNNAQGGPTRSNQSVDSTGTQAANLDGALCLRNLL TGADAASQSLQAGISQTLRTGNLQGKPALIVQGRNDALLPVNHGSRPYLGLNARVEGGSSKLSYIEVMNAQHFDGFIDLV PGYDTLFVPLVLYEQRALDAMYANLKNGTPLPPSQVVRTTPRGGTPGAAPAINAANVPNFTSTPAAGDRISVTVSGGVAT VSVPN >Mature_725_residues MKPTRTARLRRHVSPSNLIAVGAVLLAGCGVLSACGGSNDGNNVPGNTKPAFAGKVTINRYDGISDDLLTAGLGASGLAS ATAPAIANPTAPTAAELRRLAIYANYRALVDTAAKGGYGTLYGPNVDASGNVTQGSGMIPGTEYVTYSDDGTGQQNVVLL VQIPDSFDVNNPCIITATSSGSRGIYGAISTGEWGLKRKCAVAYTDKGTGAGPHDLATDTVALQDGTRTTRSAAGSNAHF AAPLTSSQLAAFNSATPNRLAFKHAHSQRNPEKDWGLFTLQAVQFAFWAINDKIAGTSGALVGSALPVRPDNTIVIASSI SNGGGAAIAAAEQDTGGWIDGVAVGEPGLNLPPNTGVQVVRGGTTLPTTGKPLFDYVSYANVFRLCAASSASVATAPAQA FFTSLTTFPAGVQANRCAALKAAGLLTSTTAAAQADEALQKMRTYGWEPESDLVHASMSFYEIDPSVSTTFGNALSRASV TDNLCGLSFAATDASFHPTAVNATALAQMAAVGNGIPPTSGVQLVNNNAQGGPTRSNQSVDSTGTQAANLDGALCLRNLL TGADAASQSLQAGISQTLRTGNLQGKPALIVQGRNDALLPVNHGSRPYLGLNARVEGGSSKLSYIEVMNAQHFDGFIDLV PGYDTLFVPLVLYEQRALDAMYANLKNGTPLPPSQVVRTTPRGGTPGAAPAINAANVPNFTSTPAAGDRISVTVSGGVAT VSVPN
Specific function: Participates in the degradation of poly-3- hydroxybutyrate (PHB). It works downstream of poly(3- hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB-oligomers) into 3HB-monomers [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016582 [H]
Pfam domain/function: PF10605 3HBOH [H]
EC number: =3.1.1.22 [H]
Molecular weight: Translated: 73982; Mature: 73982
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPTRTARLRRHVSPSNLIAVGAVLLAGCGVLSACGGSNDGNNVPGNTKPAFAGKVTINR CCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE YDGISDDLLTAGLGASGLASATAPAIANPTAPTAAELRRLAIYANYRALVDTAAKGGYGT CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHEEECHHHHHHHHCCCCCCE LYGPNVDASGNVTQGSGMIPGTEYVTYSDDGTGQQNVVLLVQIPDSFDVNNPCIITATSS EECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEECC GSRGIYGAISTGEWGLKRKCAVAYTDKGTGAGPHDLATDTVALQDGTRTTRSAAGSNAHF CCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCEE AAPLTSSQLAAFNSATPNRLAFKHAHSQRNPEKDWGLFTLQAVQFAFWAINDKIAGTSGA ECCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEHHHHHEEHHEECCCCCCCCCC LVGSALPVRPDNTIVIASSISNGGGAAIAAAEQDTGGWIDGVAVGEPGLNLPPNTGVQVV HHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCEEEE RGGTTLPTTGKPLFDYVSYANVFRLCAASSASVATAPAQAFFTSLTTFPAGVQANRCAAL ECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH KAAGLLTSTTAAAQADEALQKMRTYGWEPESDLVHASMSFYEIDPSVSTTFGNALSRASV HHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCC TDNLCGLSFAATDASFHPTAVNATALAQMAAVGNGIPPTSGVQLVNNNAQGGPTRSNQSV CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC DSTGTQAANLDGALCLRNLLTGADAASQSLQAGISQTLRTGNLQGKPALIVQGRNDALLP CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEE VNHGSRPYLGLNARVEGGSSKLSYIEVMNAQHFDGFIDLVPGYDTLFVPLVLYEQRALDA ECCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH MYANLKNGTPLPPSQVVRTTPRGGTPGAAPAINAANVPNFTSTPAAGDRISVTVSGGVAT HHHHCCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEE VSVPN EECCC >Mature Secondary Structure MKPTRTARLRRHVSPSNLIAVGAVLLAGCGVLSACGGSNDGNNVPGNTKPAFAGKVTINR CCCCHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEEE YDGISDDLLTAGLGASGLASATAPAIANPTAPTAAELRRLAIYANYRALVDTAAKGGYGT CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHEEHEEECHHHHHHHHCCCCCCE LYGPNVDASGNVTQGSGMIPGTEYVTYSDDGTGQQNVVLLVQIPDSFDVNNPCIITATSS EECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEECC GSRGIYGAISTGEWGLKRKCAVAYTDKGTGAGPHDLATDTVALQDGTRTTRSAAGSNAHF CCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCEE AAPLTSSQLAAFNSATPNRLAFKHAHSQRNPEKDWGLFTLQAVQFAFWAINDKIAGTSGA ECCCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEHHHHHEEHHEECCCCCCCCCC LVGSALPVRPDNTIVIASSISNGGGAAIAAAEQDTGGWIDGVAVGEPGLNLPPNTGVQVV HHCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCEEEE RGGTTLPTTGKPLFDYVSYANVFRLCAASSASVATAPAQAFFTSLTTFPAGVQANRCAAL ECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH KAAGLLTSTTAAAQADEALQKMRTYGWEPESDLVHASMSFYEIDPSVSTTFGNALSRASV HHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHCCC TDNLCGLSFAATDASFHPTAVNATALAQMAAVGNGIPPTSGVQLVNNNAQGGPTRSNQSV CCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCC DSTGTQAANLDGALCLRNLLTGADAASQSLQAGISQTLRTGNLQGKPALIVQGRNDALLP CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEE VNHGSRPYLGLNARVEGGSSKLSYIEVMNAQHFDGFIDLVPGYDTLFVPLVLYEQRALDA ECCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH MYANLKNGTPLPPSQVVRTTPRGGTPGAAPAINAANVPNFTSTPAAGDRISVTVSGGVAT HHHHCCCCCCCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEE VSVPN EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8981982 [H]