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The map label for this gene is ydaM [H]

Identifier: 187928260

GI number: 187928260

Start: 1260493

End: 1261743

Strand: Reverse

Name: ydaM [H]

Synonym: Rpic_1171

Alternate gene names: 187928260

Gene position: 1261743-1260493 (Counterclockwise)

Preceding gene: 187928261

Following gene: 187928255

Centisome position: 32.0

GC content: 57.95

Gene sequence:

>1251_bases
ATGAGCCCACCACTGCTAAAACTATTCGAGGCGGCCATTACGCAGGCATGGAATGCCATCGTGATCACCGATGCCGACAT
CGCTGTCGGTTGCCGAGTGCAATTTGCCAATCCAGCGTTCACAGCCATGACGGGCTATTCTCTGGACGAGCTACGCGGCC
ACTCCCTTAGGATTCTTCAAGGTCCGGACACCGATCCGGCATTGATTGATGAACTTCGCATCTGCCTGAAAGAGGCGCGA
CTCTTCGAGGGCACCGCAACGAACTATCGAAAGGACGGCTCAAGCTACACCGTCCGCTGGAGCATTTCACCAGTTCGCGA
CGACAGCGGGTTGGTCACCAATTTTGTCTCGGTGCAACAGGATATTTCCGACTACGAACAGGCAGAGCAGACAAACAGAC
TGCTCGCACGCGCGCTTGATGCAACAAGTGACCCGGTCATGCTTACGGATGCAAAAGCTCGGATCATCTTCGCGAATGCT
GCCTTCGCCAAGTCCACGGGCTACACGGTCGACGAAATCCAAGGCAGCACGCCCGCCATGTTCAAGTCAGGCAAACATGA
CGAGGCTTTTTATGCGGCTATGCGCCGCTCGCTTGCCAGCGGACAAAATTTTCGCGCCACCTTCATCAATCGGCGCCGTG
ACGGCTCGCTCTACCATGCAGAACAAAGCATCTCGCCGATATTCGGAGAGAAAGGGCGTATAAGCCACTACGTTAGTGTG
AGCAAAGACATTACCAAACGCGTAGAGCGGGAACAGGCACTGTTACGTGCAGCCACCAAAGACAAGCTCACCGGTCTGCA
CAATCGTCACCATGGCGAGCAACTCCTTGCGGAGCGGTACAGGACCGCCAGGACGCTGCAGCGCCCCCTTACCCTCGTCA
TGTGCGACATCGACCACTTCAAGAGAATCAATGACGAGTTCGGTCATCCCACCGGAGACCGCGTACTGGCCGAGGTGGCC
GACATGCTCCGGCAAGCGGTCCGCAGCCGCGACGCTGTCATTCGCTGGGGTGGCGAAGAATTCATGATCGTGCTCGACGA
ATGCTCACAGACGGATACCGTCGACCTTGCCAAGCGCATTCTCGATCGCGTCAACGCCCATGAAGATGGGGAAGTCCCCG
CGCTGACCCTCTCGCTCGGGCTCGCGACGCTGGCCCCAGACGAGGCGATCGATGAGCTCATCGCACGTGCTGACTCGGCT
CTTTACGATGCGAAACGCGCCGGGCGCAACCGGCTGTCAATCGCGGCTTGA

Upstream 100 bases:

>100_bases
CGGGCACACCGGCTATCCAGCTTCGGGCCGATCCGTCCGGGCTGGCGGACGGCTGATTCCCATCAACCCCGTTCGATTGG
ACAACCGAGCCCGGTAACTT

Downstream 100 bases:

>100_bases
TTGGCCAAATCGCAGGCCGAAGAGCACCGCGACAACGAAACCGTCATGCGGCTCCTCCGGGAGATCCCTTGAGATCAAGA
AAGAGTCGGAGAAGCAGCGT

Product: PAS/PAC sensor containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSPPLLKLFEAAITQAWNAIVITDADIAVGCRVQFANPAFTAMTGYSLDELRGHSLRILQGPDTDPALIDELRICLKEAR
LFEGTATNYRKDGSSYTVRWSISPVRDDSGLVTNFVSVQQDISDYEQAEQTNRLLARALDATSDPVMLTDAKARIIFANA
AFAKSTGYTVDEIQGSTPAMFKSGKHDEAFYAAMRRSLASGQNFRATFINRRRDGSLYHAEQSISPIFGEKGRISHYVSV
SKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLVMCDIDHFKRINDEFGHPTGDRVLAEVA
DMLRQAVRSRDAVIRWGGEEFMIVLDECSQTDTVDLAKRILDRVNAHEDGEVPALTLSLGLATLAPDEAIDELIARADSA
LYDAKRAGRNRLSIAA

Sequences:

>Translated_416_residues
MSPPLLKLFEAAITQAWNAIVITDADIAVGCRVQFANPAFTAMTGYSLDELRGHSLRILQGPDTDPALIDELRICLKEAR
LFEGTATNYRKDGSSYTVRWSISPVRDDSGLVTNFVSVQQDISDYEQAEQTNRLLARALDATSDPVMLTDAKARIIFANA
AFAKSTGYTVDEIQGSTPAMFKSGKHDEAFYAAMRRSLASGQNFRATFINRRRDGSLYHAEQSISPIFGEKGRISHYVSV
SKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLVMCDIDHFKRINDEFGHPTGDRVLAEVA
DMLRQAVRSRDAVIRWGGEEFMIVLDECSQTDTVDLAKRILDRVNAHEDGEVPALTLSLGLATLAPDEAIDELIARADSA
LYDAKRAGRNRLSIAA
>Mature_415_residues
SPPLLKLFEAAITQAWNAIVITDADIAVGCRVQFANPAFTAMTGYSLDELRGHSLRILQGPDTDPALIDELRICLKEARL
FEGTATNYRKDGSSYTVRWSISPVRDDSGLVTNFVSVQQDISDYEQAEQTNRLLARALDATSDPVMLTDAKARIIFANAA
FAKSTGYTVDEIQGSTPAMFKSGKHDEAFYAAMRRSLASGQNFRATFINRRRDGSLYHAEQSISPIFGEKGRISHYVSVS
KDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLVMCDIDHFKRINDEFGHPTGDRVLAEVAD
MLRQAVRSRDAVIRWGGEEFMIVLDECSQTDTVDLAKRILDRVNAHEDGEVPALTLSLGLATLAPDEAIDELIARADSAL
YDAKRAGRNRLSIAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=295, Percent_Identity=31.5254237288136, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI145693134, Length=188, Percent_Identity=36.7021276595745, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=36, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788381, Length=340, Percent_Identity=28.8235294117647, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082007, Length=204, Percent_Identity=33.8235294117647, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=33.5365853658537, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=35.4430379746835, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787541, Length=287, Percent_Identity=26.4808362369338, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787802, Length=203, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=179, Percent_Identity=29.608938547486, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=30.1775147928994, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=35.2201257861635, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081974, Length=160, Percent_Identity=26.875, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787056, Length=123, Percent_Identity=31.7073170731707, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87081921, Length=245, Percent_Identity=26.1224489795918, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46228; Mature: 46097

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPPLLKLFEAAITQAWNAIVITDADIAVGCRVQFANPAFTAMTGYSLDELRGHSLRILQ
CCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEEECCCCCHHCCCCCHHHHCCCEEEEEE
GPDTDPALIDELRICLKEARLFEGTATNYRKDGSSYTVRWSISPVRDDSGLVTNFVSVQQ
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHH
DISDYEQAEQTNRLLARALDATSDPVMLTDAKARIIFANAAFAKSTGYTVDEIQGSTPAM
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECHHHCCCCCCHHHCCCCCCHH
FKSGKHDEAFYAAMRRSLASGQNFRATFINRRRDGSLYHAEQSISPIFGEKGRISHYVSV
HCCCCCHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCEEECHHCCCCCCCCCCCCHHHHHH
SKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLVMCDIDHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHH
KRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLDECSQTDTVDLAKRI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCHHHHHHHH
LDRVNAHEDGEVPALTLSLGLATLAPDEAIDELIARADSALYDAKRAGRNRLSIAA
HHHHCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
>Mature Secondary Structure 
SPPLLKLFEAAITQAWNAIVITDADIAVGCRVQFANPAFTAMTGYSLDELRGHSLRILQ
CCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEEECCCCCHHCCCCCHHHHCCCEEEEEE
GPDTDPALIDELRICLKEARLFEGTATNYRKDGSSYTVRWSISPVRDDSGLVTNFVSVQQ
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHH
DISDYEQAEQTNRLLARALDATSDPVMLTDAKARIIFANAAFAKSTGYTVDEIQGSTPAM
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEECHHHCCCCCCHHHCCCCCCHH
FKSGKHDEAFYAAMRRSLASGQNFRATFINRRRDGSLYHAEQSISPIFGEKGRISHYVSV
HCCCCCHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCEEECHHCCCCCCCCCCCCHHHHHH
SKDITKRVEREQALLRAATKDKLTGLHNRHHGEQLLAERYRTARTLQRPLTLVMCDIDHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHH
KRINDEFGHPTGDRVLAEVADMLRQAVRSRDAVIRWGGEEFMIVLDECSQTDTVDLAKRI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCHHHHHHHH
LDRVNAHEDGEVPALTLSLGLATLAPDEAIDELIARADSALYDAKRAGRNRLSIAA
HHHHCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]