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The map label for this gene is bexD [H]

Identifier: 187928251

GI number: 187928251

Start: 1248347

End: 1249513

Strand: Reverse

Name: bexD [H]

Synonym: Rpic_1161

Alternate gene names: 187928251

Gene position: 1249513-1248347 (Counterclockwise)

Preceding gene: 187928255

Following gene: 187928250

Centisome position: 31.69

GC content: 61.53

Gene sequence:

>1167_bases
ATGCGCAGCCTGCCCGCCTTGCTTTCGGCAGTGTCGATTGTCGGCATTGCCAGCCTTACCGCCTGTTCGTCCGTCCCCTC
TTCCGGCCCAACCCGATCGCAGGTAACCGACGCCGCCACCGATGCGTCCGTCACAGCCGGAATCCAGATCGTAGACGTGA
CCGAAGAAGTGGCCCAGCGTCTTCTGGCCGAGCGCCAGACCGCCGACTTTGCCCGGACGTTGGGGGGCGGGGCGCAATTC
CAGCAGCAACTGGGCGTGGGCGACGTCATTGAAGTTTCCGTCTGGGAAGCCCCGCCGGCCACCCTGTTTGGCGCCACCGG
CATGGACCCGCGTGTTGCGCCAAGCAACGCCCGCGTCTCCGTGCTACCCGAACAGATGATCAGCGGCGACGGTTATATCA
ATGTCCCATTTGCCGGGCAAATCAAGGCCGCCGGGCGCACCACCACACAACTGGAAAAGGACATTACCGCCGCCCTGAAA
GGCAAGGCCAACCAGCCCCAGGTGCTGGTGCGGCTGTCCAAGAACGTTACCTCCTACGTGACCGTAGTGGGCGACGTTGC
CACCAGCACCCGCATGCAACTGACTGCACGCGGTGAACGGCTGCTTGATGCCGTGGCCAGTGCCGGCGGCGTGCGCCAGC
CGGTAGACAAGATAACGATTCAAGTCACCCGCGGCAACGCGGCTCAAACCCTGCCGCTGCAAACCATCATTCGCGACCCG
CGCCAGAATGTGCCGCTGCGTGCTGGTGACGTCGTAACCGCGCTATTCCAGCCCCTCAGCTTTACTGCGCTGGGTGCCAC
CGGCAAAAACCAGGAAATCAATTTCGAAGCGCAAGGCATTACGCTGGCCCAGGCCATTGCCCGTGCCGGCGGCCTGGAAG
ACTCTCGCGCCGATGCGCGGGGCGTGTTCATTTTCCGCTTTGAAGATGCCAACGCCCTGCCCTGGCCGCGCCAGCCGGTG
CGCACCACACAGAACGGCAAGGTGCCGGTGGTCTACCGTTTGAACCTAAAGGACCCCGGCAGCTTTTTTGTAGCGCAGAC
GTTTGTGATGGATAACAAGGATTTGCTGTACGTGTCGAATGCACCGATTGCTGAGCTGCAGAAGTTCTTGAATGTAGTGT
TTTCCGTGGCTTATCCGGTGGTGACTACGGTGAATACGTTCAAGTAA

Upstream 100 bases:

>100_bases
CCAACGACTTTTGCGGGAAAATTGCCAAAGGGCTGCATATTCTAGCGACGGGCATGTGATACTTGCAAAGTTTTGCTTGA
CCTCAAGAACCTTCTCCAGA

Downstream 100 bases:

>100_bases
TTCTGTTTGCTTCGGTAGCCAGTCTAAATGGGGGCTGGCTATACCGTGCCTCAGCTCTCGAGCGCTTGCCCGGGCGGGTA
CCGCCCTGCAATTGCTCAGC

Product: polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MRSLPALLSAVSIVGIASLTACSSVPSSGPTRSQVTDAATDASVTAGIQIVDVTEEVAQRLLAERQTADFARTLGGGAQF
QQQLGVGDVIEVSVWEAPPATLFGATGMDPRVAPSNARVSVLPEQMISGDGYINVPFAGQIKAAGRTTTQLEKDITAALK
GKANQPQVLVRLSKNVTSYVTVVGDVATSTRMQLTARGERLLDAVASAGGVRQPVDKITIQVTRGNAAQTLPLQTIIRDP
RQNVPLRAGDVVTALFQPLSFTALGATGKNQEINFEAQGITLAQAIARAGGLEDSRADARGVFIFRFEDANALPWPRQPV
RTTQNGKVPVVYRLNLKDPGSFFVAQTFVMDNKDLLYVSNAPIAELQKFLNVVFSVAYPVVTTVNTFK

Sequences:

>Translated_388_residues
MRSLPALLSAVSIVGIASLTACSSVPSSGPTRSQVTDAATDASVTAGIQIVDVTEEVAQRLLAERQTADFARTLGGGAQF
QQQLGVGDVIEVSVWEAPPATLFGATGMDPRVAPSNARVSVLPEQMISGDGYINVPFAGQIKAAGRTTTQLEKDITAALK
GKANQPQVLVRLSKNVTSYVTVVGDVATSTRMQLTARGERLLDAVASAGGVRQPVDKITIQVTRGNAAQTLPLQTIIRDP
RQNVPLRAGDVVTALFQPLSFTALGATGKNQEINFEAQGITLAQAIARAGGLEDSRADARGVFIFRFEDANALPWPRQPV
RTTQNGKVPVVYRLNLKDPGSFFVAQTFVMDNKDLLYVSNAPIAELQKFLNVVFSVAYPVVTTVNTFK
>Mature_388_residues
MRSLPALLSAVSIVGIASLTACSSVPSSGPTRSQVTDAATDASVTAGIQIVDVTEEVAQRLLAERQTADFARTLGGGAQF
QQQLGVGDVIEVSVWEAPPATLFGATGMDPRVAPSNARVSVLPEQMISGDGYINVPFAGQIKAAGRTTTQLEKDITAALK
GKANQPQVLVRLSKNVTSYVTVVGDVATSTRMQLTARGERLLDAVASAGGVRQPVDKITIQVTRGNAAQTLPLQTIIRDP
RQNVPLRAGDVVTALFQPLSFTALGATGKNQEINFEAQGITLAQAIARAGGLEDSRADARGVFIFRFEDANALPWPRQPV
RTTQNGKVPVVYRLNLKDPGSFFVAQTFVMDNKDLLYVSNAPIAELQKFLNVVFSVAYPVVTTVNTFK

Specific function: May form an ATP-driven capsule polysaccharide export apparatus, in association with the BexA, BexB and BexC proteins. May function as a membrane anchor for capsular polysaccharides. Possible porin properties [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=389, Percent_Identity=26.7352185089974, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1788376, Length=383, Percent_Identity=24.2819843342037, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 41205; Mature: 41205

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLPALLSAVSIVGIASLTACSSVPSSGPTRSQVTDAATDASVTAGIQIVDVTEEVAQR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHH
LLAERQTADFARTLGGGAQFQQQLGVGDVIEVSVWEAPPATLFGATGMDPRVAPSNARVS
HHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCEEE
VLPEQMISGDGYINVPFAGQIKAAGRTTTQLEKDITAALKGKANQPQVLVRLSKNVTSYV
ECHHHHHCCCCEEECCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEE
TVVGDVATSTRMQLTARGERLLDAVASAGGVRQPVDKITIQVTRGNAAQTLPLQTIIRDP
EEEECCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHCCC
RQNVPLRAGDVVTALFQPLSFTALGATGKNQEINFEAQGITLAQAIARAGGLEDSRADAR
CCCCCCCCHHHHHHHHCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCC
GVFIFRFEDANALPWPRQPVRTTQNGKVPVVYRLNLKDPGSFFVAQTFVMDNKDLLYVSN
EEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEECC
APIAELQKFLNVVFSVAYPVVTTVNTFK
CCHHHHHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MRSLPALLSAVSIVGIASLTACSSVPSSGPTRSQVTDAATDASVTAGIQIVDVTEEVAQR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEEECHHHHHHH
LLAERQTADFARTLGGGAQFQQQLGVGDVIEVSVWEAPPATLFGATGMDPRVAPSNARVS
HHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCEEE
VLPEQMISGDGYINVPFAGQIKAAGRTTTQLEKDITAALKGKANQPQVLVRLSKNVTSYV
ECHHHHHCCCCEEECCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEE
TVVGDVATSTRMQLTARGERLLDAVASAGGVRQPVDKITIQVTRGNAAQTLPLQTIIRDP
EEEECCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHCCC
RQNVPLRAGDVVTALFQPLSFTALGATGKNQEINFEAQGITLAQAIARAGGLEDSRADAR
CCCCCCCCHHHHHHHHCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCC
GVFIFRFEDANALPWPRQPVRTTQNGKVPVVYRLNLKDPGSFFVAQTFVMDNKDLLYVSN
EEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEECC
APIAELQKFLNVVFSVAYPVVTTVNTFK
CCHHHHHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2082145 [H]