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The map label for this gene is pecT [H]

Identifier: 187928221

GI number: 187928221

Start: 1207259

End: 1208128

Strand: Direct

Name: pecT [H]

Synonym: Rpic_1129

Alternate gene names: 187928221

Gene position: 1207259-1208128 (Clockwise)

Preceding gene: 187928219

Following gene: 187928223

Centisome position: 30.62

GC content: 63.45

Gene sequence:

>870_bases
ATGCGAAATCTGGACATCGATCTGCTGCGCACCTTCGTGGCGATCGCTCAGCACGAAACGTTTGCCGCGGCAGCAGCACG
GGTGGGGCGCACGCAGTCGGCGGTTACGCAGCAGATGCAGCGGTTGGAGGAGGAAATGGGCTGCGCGCTGTTCGAAAAGC
GCGGCCGCCACAAGATGATGACGCCCGATGGCGTGCGGCTCGTCGCCTATGCGCACAAGATCCTGGCGCTCAACGACCAG
GCCGTGCAGGTGATCCAAACTGGTGGGCCGATCGAGAAAATCCGCATCGGCTCACCGCACGATGTGGCCGATTCGATCCT
GCCGAATCTGCTGCGGCGGTTGTCCAAGCTGTCGCCGGAATTGCAGATGGAAATCAACGTGGGCCGCAGCCCGTTCCTGA
TGGACGCGTTGCGCGACAAGACGCTCGATCTGGCGATCTCGACACGCTATGACGATGCCTTTCCCGGCATCAAGCTGCGC
ACGTCGCCGATGGTGTGGATCTGCGCGGAAGACTTCATCTTCAATCCCGCCGCGCCGGTGCCACTGGTCATGGCCGACGA
GCTGAGCCTGTTCCGCCAATTGTCGATCGAATGCCTGGATGCCCACCACATTCCGTGGCGCACGAGCTATCTGTCGCCCA
CGCTGACGGGCATCAAGGCCGCGATCAGCGCGGGGCTCGGCGTGACCGCGCGCACGACCGAATTGCTCGATGCCAACATG
CGTGTGCTGACCGAGGCCGATGGTCTGCCGCGTCTGCCCGAGGTAGCGTTCTACCTGTACGTGCAGCCGACGTGCACGAG
TGCCGTGCTGCGCGATCTGTTCGATTCCACCGATCGCGTCGCCACGCGCTTCGGGCCGCCGTTCATGTGA

Upstream 100 bases:

>100_bases
AGTTTTATTTGTGTGTCTGACAGGTTATCGGCCAGAATTGCGCAGAACAATTTAATTTTTAGCGGGAATCAATTAGAAAA
TCTGAAGTATCGGGATCGGG

Downstream 100 bases:

>100_bases
GCGGCATCGCCTCGGCCGTGACCGCCGCGCGCGGGCTGCGCCACTCGGGCGGTTTCCACAGGTAGCGAATGTCCCGATCG
CGGAACACATCAGCCCACAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRNLDIDLLRTFVAIAQHETFAAAAARVGRTQSAVTQQMQRLEEEMGCALFEKRGRHKMMTPDGVRLVAYAHKILALNDQ
AVQVIQTGGPIEKIRIGSPHDVADSILPNLLRRLSKLSPELQMEINVGRSPFLMDALRDKTLDLAISTRYDDAFPGIKLR
TSPMVWICAEDFIFNPAAPVPLVMADELSLFRQLSIECLDAHHIPWRTSYLSPTLTGIKAAISAGLGVTARTTELLDANM
RVLTEADGLPRLPEVAFYLYVQPTCTSAVLRDLFDSTDRVATRFGPPFM

Sequences:

>Translated_289_residues
MRNLDIDLLRTFVAIAQHETFAAAAARVGRTQSAVTQQMQRLEEEMGCALFEKRGRHKMMTPDGVRLVAYAHKILALNDQ
AVQVIQTGGPIEKIRIGSPHDVADSILPNLLRRLSKLSPELQMEINVGRSPFLMDALRDKTLDLAISTRYDDAFPGIKLR
TSPMVWICAEDFIFNPAAPVPLVMADELSLFRQLSIECLDAHHIPWRTSYLSPTLTGIKAAISAGLGVTARTTELLDANM
RVLTEADGLPRLPEVAFYLYVQPTCTSAVLRDLFDSTDRVATRFGPPFM
>Mature_289_residues
MRNLDIDLLRTFVAIAQHETFAAAAARVGRTQSAVTQQMQRLEEEMGCALFEKRGRHKMMTPDGVRLVAYAHKILALNDQ
AVQVIQTGGPIEKIRIGSPHDVADSILPNLLRRLSKLSPELQMEINVGRSPFLMDALRDKTLDLAISTRYDDAFPGIKLR
TSPMVWICAEDFIFNPAAPVPLVMADELSLFRQLSIECLDAHHIPWRTSYLSPTLTGIKAAISAGLGVTARTTELLDANM
RVLTEADGLPRLPEVAFYLYVQPTCTSAVLRDLFDSTDRVATRFGPPFM

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=276, Percent_Identity=42.7536231884058, Blast_Score=233, Evalue=1e-62,
Organism=Escherichia coli, GI1787806, Length=143, Percent_Identity=28.6713286713287, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790399, Length=242, Percent_Identity=26.8595041322314, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082132, Length=235, Percent_Identity=22.1276595744681, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=23.2876712328767, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32105; Mature: 32105

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNLDIDLLRTFVAIAQHETFAAAAARVGRTQSAVTQQMQRLEEEMGCALFEKRGRHKMM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCC
TPDGVRLVAYAHKILALNDQAVQVIQTGGPIEKIRIGSPHDVADSILPNLLRRLSKLSPE
CCCCHHHHHHHHHHHEECHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
LQMEINVGRSPFLMDALRDKTLDLAISTRYDDAFPGIKLRTSPMVWICAEDFIFNPAAPV
EEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCEEECCCEEEEEECCCCCCCCCCC
PLVMADELSLFRQLSIECLDAHHIPWRTSYLSPTLTGIKAAISAGLGVTARTTELLDANM
CEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCH
RVLTEADGLPRLPEVAFYLYVQPTCTSAVLRDLFDSTDRVATRFGPPFM
HEEECCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHCCCCCC
>Mature Secondary Structure
MRNLDIDLLRTFVAIAQHETFAAAAARVGRTQSAVTQQMQRLEEEMGCALFEKRGRHKMM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCC
TPDGVRLVAYAHKILALNDQAVQVIQTGGPIEKIRIGSPHDVADSILPNLLRRLSKLSPE
CCCCHHHHHHHHHHHEECHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
LQMEINVGRSPFLMDALRDKTLDLAISTRYDDAFPGIKLRTSPMVWICAEDFIFNPAAPV
EEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCEEECCCEEEEEECCCCCCCCCCC
PLVMADELSLFRQLSIECLDAHHIPWRTSYLSPTLTGIKAAISAGLGVTARTTELLDANM
CEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCH
RVLTEADGLPRLPEVAFYLYVQPTCTSAVLRDLFDSTDRVATRFGPPFM
HEEECCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]