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The map label for this gene is yhcM [H]

Identifier: 187928193

GI number: 187928193

Start: 1174948

End: 1176045

Strand: Direct

Name: yhcM [H]

Synonym: Rpic_1100

Alternate gene names: 187928193

Gene position: 1174948-1176045 (Clockwise)

Preceding gene: 187928192

Following gene: 187928195

Centisome position: 29.8

GC content: 62.84

Gene sequence:

>1098_bases
ATGAATGTCCAGGAAACCTACCTACAGGAACTGAAGGCGCGCGGCTATCGGCCCGACGAAGCGCAGCAACGCGCCGTCGA
CCGCCTGCAGCGGTGTTACGACGAATGGGTTGCCTACAAGGCCCGTCGTTCGAATGCGCTGCGCAAGATGCTCGTGCGGC
CCGATTTGCCCCGTGGCGTCTACATGTGGGGCGGGGTGGGGCGCGGCAAGTCGTTCTTGATGGATGCGTTCTATAGCTGC
GTGCCGTTGGTGCGCAAGACGCGACTGCACTTTCACGAGTTCATGCGCGAAGTGCATCGCCAACTGGAAGAGCTGCGCGG
TCGCGCCGATCCGCTGGACGAACTGGCCCGCCGCATCGCCAAGCGCTACCGCCTGATCTGCTTTGACGAATTCCACGTCA
GCGACGTTGCCGACGCAATGATCCTGCATCGCTTGCTGGATCAGCTGTTTGCCAACGGCGTGCAGTTTGTGATGACGTCC
AACTATCGGCCCGACTTGCTGTATCCGGACGGCCTGCATCGCGACCGCGTGCTGCCGGCCATTGCGCTGCTGCAGGAGAA
GCTCGACGTCCTCAACGTCGACGCAGGCGTCGACTACCGCAAGCGGGCGATGGAGCAGGTGCAGGCGTACTACACGCCAT
TGGGCGCCAAGGCCAACTCGGCGTTGCGCGATGCGTTTACGGCGGTGGCCGGAGTGTCGGACGAGTCGCCGGTGCTGCGC
ATCGAGCATCGTGAGATTCGGGCAGCCCGTAAGGCCGGCGGTGTGGTGTGGTTCGACTTCGCCACGCTGTGCGGGGGACC
GCGCTCACAGAACGATTACCTGGAAATCGCGTCGCGCTTTCATACCGTCATCTTGGCCGATGTACCGAAGATGACGCCGC
GCATGGCATCCGAAGCGCGCCGCTTCACGTGGCTGATCGACGTGTTCTACGACCACAAGGTCAAGCTGCTGATGTCGGCC
GAGGTGCCGGCAGACGAGCTGTACACCGAAGGCCAGATGGCCAACGAATTCCAACGCACCGTGTCGCGCATCGTCGAGAT
GCAGTCGCGCGAATACCTCGAGGCACCTCGCCGCGAAGTGGACACGTCACTGACGTGA

Upstream 100 bases:

>100_bases
ATCGCAAGCCGCAAGGCAAGCACGATGCCCGGTGAATCCACAAGATTGCCGGGCATCGGTCCATTTGGGCGCGCAAACGG
GCCCCAAGAAGATCAAGCAG

Downstream 100 bases:

>100_bases
TTGCGCTCAGTGCCGAGTGCCTAGTGTGACGTCGGTGGCGGGTTGCGGTGCGACGGCGGTGCCTGCGCGGGCCGCAGGTT
TGCGCCAAAGAAGTCCTGCG

Product: AFG1-family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNVQETYLQELKARGYRPDEAQQRAVDRLQRCYDEWVAYKARRSNALRKMLVRPDLPRGVYMWGGVGRGKSFLMDAFYSC
VPLVRKTRLHFHEFMREVHRQLEELRGRADPLDELARRIAKRYRLICFDEFHVSDVADAMILHRLLDQLFANGVQFVMTS
NYRPDLLYPDGLHRDRVLPAIALLQEKLDVLNVDAGVDYRKRAMEQVQAYYTPLGAKANSALRDAFTAVAGVSDESPVLR
IEHREIRAARKAGGVVWFDFATLCGGPRSQNDYLEIASRFHTVILADVPKMTPRMASEARRFTWLIDVFYDHKVKLLMSA
EVPADELYTEGQMANEFQRTVSRIVEMQSREYLEAPRREVDTSLT

Sequences:

>Translated_365_residues
MNVQETYLQELKARGYRPDEAQQRAVDRLQRCYDEWVAYKARRSNALRKMLVRPDLPRGVYMWGGVGRGKSFLMDAFYSC
VPLVRKTRLHFHEFMREVHRQLEELRGRADPLDELARRIAKRYRLICFDEFHVSDVADAMILHRLLDQLFANGVQFVMTS
NYRPDLLYPDGLHRDRVLPAIALLQEKLDVLNVDAGVDYRKRAMEQVQAYYTPLGAKANSALRDAFTAVAGVSDESPVLR
IEHREIRAARKAGGVVWFDFATLCGGPRSQNDYLEIASRFHTVILADVPKMTPRMASEARRFTWLIDVFYDHKVKLLMSA
EVPADELYTEGQMANEFQRTVSRIVEMQSREYLEAPRREVDTSLT
>Mature_365_residues
MNVQETYLQELKARGYRPDEAQQRAVDRLQRCYDEWVAYKARRSNALRKMLVRPDLPRGVYMWGGVGRGKSFLMDAFYSC
VPLVRKTRLHFHEFMREVHRQLEELRGRADPLDELARRIAKRYRLICFDEFHVSDVADAMILHRLLDQLFANGVQFVMTS
NYRPDLLYPDGLHRDRVLPAIALLQEKLDVLNVDAGVDYRKRAMEQVQAYYTPLGAKANSALRDAFTAVAGVSDESPVLR
IEHREIRAARKAGGVVWFDFATLCGGPRSQNDYLEIASRFHTVILADVPKMTPRMASEARRFTWLIDVFYDHKVKLLMSA
EVPADELYTEGQMANEFQRTVSRIVEMQSREYLEAPRREVDTSLT

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=390, Percent_Identity=33.8461538461538, Blast_Score=238, Evalue=6e-63,
Organism=Escherichia coli, GI1789627, Length=360, Percent_Identity=45.2777777777778, Blast_Score=302, Evalue=2e-83,
Organism=Caenorhabditis elegans, GI17505769, Length=414, Percent_Identity=32.6086956521739, Blast_Score=216, Evalue=2e-56,
Organism=Saccharomyces cerevisiae, GI6320783, Length=326, Percent_Identity=33.7423312883436, Blast_Score=172, Evalue=6e-44,
Organism=Drosophila melanogaster, GI20129913, Length=349, Percent_Identity=34.3839541547278, Blast_Score=201, Evalue=7e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42326; Mature: 42326

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVQETYLQELKARGYRPDEAQQRAVDRLQRCYDEWVAYKARRSNALRKMLVRPDLPRGV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
YMWGGVGRGKSFLMDAFYSCVPLVRKTRLHFHEFMREVHRQLEELRGRADPLDELARRIA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDVADAMILHRLLDQLFANGVQFVMTSNYRPDLLYPDGLHRDRVLPA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHH
IALLQEKLDVLNVDAGVDYRKRAMEQVQAYYTPLGAKANSALRDAFTAVAGVSDESPVLR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
IEHREIRAARKAGGVVWFDFATLCGGPRSQNDYLEIASRFHTVILADVPKMTPRMASEAR
EHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RFTWLIDVFYDHKVKLLMSAEVPADELYTEGQMANEFQRTVSRIVEMQSREYLEAPRREV
HHHHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
CCCCC
>Mature Secondary Structure
MNVQETYLQELKARGYRPDEAQQRAVDRLQRCYDEWVAYKARRSNALRKMLVRPDLPRGV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
YMWGGVGRGKSFLMDAFYSCVPLVRKTRLHFHEFMREVHRQLEELRGRADPLDELARRIA
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDVADAMILHRLLDQLFANGVQFVMTSNYRPDLLYPDGLHRDRVLPA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHH
IALLQEKLDVLNVDAGVDYRKRAMEQVQAYYTPLGAKANSALRDAFTAVAGVSDESPVLR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
IEHREIRAARKAGGVVWFDFATLCGGPRSQNDYLEIASRFHTVILADVPKMTPRMASEAR
EHHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RFTWLIDVFYDHKVKLLMSAEVPADELYTEGQMANEFQRTVSRIVEMQSREYLEAPRREV
HHHHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]