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The map label for this gene is ygeR [C]

Identifier: 187928143

GI number: 187928143

Start: 1115958

End: 1116785

Strand: Direct

Name: ygeR [C]

Synonym: Rpic_1050

Alternate gene names: 187928143

Gene position: 1115958-1116785 (Clockwise)

Preceding gene: 187928142

Following gene: 187928144

Centisome position: 28.31

GC content: 61.59

Gene sequence:

>828_bases
ATGTTCATTTCCCGGAGCTCCATGAACCGTCCAAGCCCCGCACGCGCAGGCCGGCTCGCCGTGGCGATGGTGTCGGCCGC
ACTACTGGCGGCTTGCGCATCCTCCGGCAACCAGGCCCCTGTTCTCGACCGCACCTCGCGTGCAGGCAACGCTGGCACCG
TGTCGCAAGAGCCGCCGCCCCCCGGCTACTATCGTGTCAAGCGTGGCGATACCTTGTACAGCATCGCATTGCGTAACGGC
CAGGCGCCGCGAGACCTGGTAGCCTGGAACAATATCGCCAACCCGAACCAGATCGAAGTCGATCAGTTGTTGCGCGTTGT
ACCGCCGAACGCGGATGTCAGCAGCACTGGGGCCGTCGTTACGCCGGTTCGCCCGACCAATACAACTACGCAGCCAGTCG
ATTCCATCGCGGTCACGCCGCCGCCCACTGCGTCGTCCAGCGCTCCTGCCGGGGCAAGCGACAGTGCAATCTCGCTGGGC
TGGCCGGCACGCGGCTCACTCATCAACCGTTTCGATGACAAGAGCAACAAGGGCATCGACATTGGCGGCAAACGTGGCGA
CGCGGTGGTTGCTGCTGACGACGGAAAAGTGATCCACGTTGGACCCTTGCGTGGGTACGGGAATCTTGTCATCATCAAAC
ACAACGACACGTTCCTGACCGCCTACGGCAACAACGACAAGGTTCTGGTCACCGAGCAATCCACGGTCAAGAAAGGGCAG
AAGATCGCCGAAATGGGCAGTACCGATGCGGATCGCGTGAAGCTTCATTTTGAAGTGCGCCGCAACGGTAAGCCGGTCGA
TCCGATGCGCTACTTGCCGCCTCAATAG

Upstream 100 bases:

>100_bases
CAGCAGCTCGTTCTCATTGAGCGTCGCAGCCGCTTCGAGTTTCACAGTACCGCGCTTGAAGGCGTTTTCTTTGTCCCGTT
AAAATCAGGAACTGTTTAGC

Downstream 100 bases:

>100_bases
AGGAATGCATGCCGCGCCAGAAAGCCGCCACGCCCGTCACCCCAGCCGATGACAACATCGACGCTGCTGTAGAGGGCCAG
CGCACCCCAAACGGGCGCGC

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MFISRSSMNRPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGNAGTVSQEPPPPGYYRVKRGDTLYSIALRNG
QAPRDLVAWNNIANPNQIEVDQLLRVVPPNADVSSTGAVVTPVRPTNTTTQPVDSIAVTPPPTASSSAPAGASDSAISLG
WPARGSLINRFDDKSNKGIDIGGKRGDAVVAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQ
KIAEMGSTDADRVKLHFEVRRNGKPVDPMRYLPPQ

Sequences:

>Translated_275_residues
MFISRSSMNRPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGNAGTVSQEPPPPGYYRVKRGDTLYSIALRNG
QAPRDLVAWNNIANPNQIEVDQLLRVVPPNADVSSTGAVVTPVRPTNTTTQPVDSIAVTPPPTASSSAPAGASDSAISLG
WPARGSLINRFDDKSNKGIDIGGKRGDAVVAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQ
KIAEMGSTDADRVKLHFEVRRNGKPVDPMRYLPPQ
>Mature_275_residues
MFISRSSMNRPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGNAGTVSQEPPPPGYYRVKRGDTLYSIALRNG
QAPRDLVAWNNIANPNQIEVDQLLRVVPPNADVSSTGAVVTPVRPTNTTTQPVDSIAVTPPPTASSSAPAGASDSAISLG
WPARGSLINRFDDKSNKGIDIGGKRGDAVVAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQ
KIAEMGSTDADRVKLHFEVRRNGKPVDPMRYLPPQ

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=271, Percent_Identity=39.4833948339483, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789099, Length=263, Percent_Identity=38.0228136882129, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI87082297, Length=151, Percent_Identity=35.0993377483444, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 29040; Mature: 29040

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00782 TFIIB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFISRSSMNRPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGNAGTVSQEPPP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCC
PGYYRVKRGDTLYSIALRNGQAPRDLVAWNNIANPNQIEVDQLLRVVPPNADVSSTGAVV
CCEEEEECCCEEEEEEECCCCCCCHHEEECCCCCCCEECHHHHHHHCCCCCCCCCCCCEE
TPVRPTNTTTQPVDSIAVTPPPTASSSAPAGASDSAISLGWPARGSLINRFDDKSNKGID
ECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCEE
IGGKRGDAVVAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQ
ECCCCCCEEEEECCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCEEEEECHHHHHHHH
KIAEMGSTDADRVKLHFEVRRNGKPVDPMRYLPPQ
HHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MFISRSSMNRPSPARAGRLAVAMVSAALLAACASSGNQAPVLDRTSRAGNAGTVSQEPPP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCC
PGYYRVKRGDTLYSIALRNGQAPRDLVAWNNIANPNQIEVDQLLRVVPPNADVSSTGAVV
CCEEEEECCCEEEEEEECCCCCCCHHEEECCCCCCCEECHHHHHHHCCCCCCCCCCCCEE
TPVRPTNTTTQPVDSIAVTPPPTASSSAPAGASDSAISLGWPARGSLINRFDDKSNKGID
ECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCEE
IGGKRGDAVVAADDGKVIHVGPLRGYGNLVIIKHNDTFLTAYGNNDKVLVTEQSTVKKGQ
ECCCCCCEEEEECCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCEEEEECHHHHHHHH
KIAEMGSTDADRVKLHFEVRRNGKPVDPMRYLPPQ
HHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]