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The map label for this gene is 187928132

Identifier: 187928132

GI number: 187928132

Start: 1104529

End: 1105917

Strand: Reverse

Name: 187928132

Synonym: Rpic_1039

Alternate gene names: NA

Gene position: 1105917-1104529 (Counterclockwise)

Preceding gene: 187928140

Following gene: 187928125

Centisome position: 28.05

GC content: 62.78

Gene sequence:

>1389_bases
ATGCCCTCGCTGCCTCTTCACGTCATCCCTCGCCGTCCATTCACTCTGATGGGAGCCGTGCAACAAGCCACGGCGGCCTT
CATGCTCGTATTGAGTCTGCAAAGCGCTGCGCTGGCGGCTGGCGCCGATACGCCTGCCACGGACATCCCAGAGCCGGAGC
GATGGAACGTGCATGGACAGTTCACCAATGTGACGCAATGGCATCCGTCGTTCCGCTCGCCGTACAGCGGCACCAATAGC
CTCACGCCTGACAACAACACCAAGGAGACGGTCGACGTCACGCTCTACCTCGGGCTGCGCCTGTGGAAGGGTGCCGAGCT
GTACGCGAACCCGGAAATCGACCAAGGTTTCGGACTAAGCAATACGGTCGGCCTGGCCGGCTTCTCAAGCGGGGAGGCCT
ACAAGATCGGCAACAATGCTCCCTACCGCAAGCTGCCGCGCTTGTTCCTGCGGCAGGTCATCAATCTCGGCGGCGAGCAG
CAGGCAGTAGAGTCAGCCCCCAACCAGCTTGCCGGCAGCCGCTCGGCAGACAACGTCACCATCACCGTCGGCAAGTTCTC
GGTGGCAGACATATTCGACACGAACACGTACGCGCACGACCCGCGGGGCGATTTCCTGAACTGGGCGGTGATCGATGCCG
GCGCATTCGACTATGCAGCGGACGCCTGGGGCTACACGCATGGTCTGGCGGTGGAATGGACGCAATCGTGGTGGTCGCTG
CGCGGCGGACTCTTCGCGCTTTCGATGGTACCCAACAGTGTCACGATCGACACCACGTGGAAGCAGTACCAGTGGGTGGG
CGAATTTGAAGCGCGCCATGATTGGTTCGGCCGCCCGGGCAAGGTCAAGCTGCTCGCCTTTGCAACGCGAGGCCGGATGG
GTGGTTATGGCGATGCGGTCAACCTCGCCCAACAGACGGGCAACACGCCGGACACGGGCCTCGTGCGGCGCCTCGCCTGG
CGCCCCGGTGTTGCCTTGAACCTGGAGCAGGAAATCACCTCCGACCTGGGCGTCTTCGCACGGGCCAGCATGAACGACGG
CAGCAAGGAAACATTCGAGTTCACCGACATCAACCAGTCGGTGTCGGCCGGGTTCTCCCTGAAAGGCAATCGTTGGGGAC
GCCCGAACGACACGTTCGGTGCCGCCGTGGTGGTGAACGGCTTGTCGCGCGCGGCACGCCAATATTTCGCGGCCGGCGGC
ATGGGCGTACTGATTGGTGATGGCGCCCTCAACTACGGCACCGAACGCATCGCCGAGCTGTACTACAACTGGGCGGCCAT
CAAACACCTCACGCTGGGCCTGAACTACCAGTATGTGGTCCATCCGGCGTACAACCGGGATCGCGGCCCGGTATCAATCG
TCGGGGCACGCGTCCACGCTGAATTTTAA

Upstream 100 bases:

>100_bases
ATCGGCAAGTCATGACATAGCGCTTAGCATGGCCGGGTTTTTGCCTCATTCCGGCTGCGCCAGCCCGGAATTCTAGCGGT
TGCCCCATTTGTCGTGCCTC

Downstream 100 bases:

>100_bases
GCAACTGCGGAAGATCAGAGTTGGCGCCGGTCCAGCACGGCGCGAGCGATGGTACCCGCGTCCACGTATTCCAGCTCACC
GCCTACCGGCACGCCACGCG

Product: Carbohydrate-selective porin OprB

Products: NA

Alternate protein names: OmpA-Like Transmembrane Domain-Containing Protein; Carbohydrate-Selective Porin Oprb; OmpA-Like Transmembrane Domain Protein; OmpA Domain-Containing Protein; Outer Membrane Protein A-Like; Carbohydrate-Selective Porin

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MPSLPLHVIPRRPFTLMGAVQQATAAFMLVLSLQSAALAAGADTPATDIPEPERWNVHGQFTNVTQWHPSFRSPYSGTNS
LTPDNNTKETVDVTLYLGLRLWKGAELYANPEIDQGFGLSNTVGLAGFSSGEAYKIGNNAPYRKLPRLFLRQVINLGGEQ
QAVESAPNQLAGSRSADNVTITVGKFSVADIFDTNTYAHDPRGDFLNWAVIDAGAFDYAADAWGYTHGLAVEWTQSWWSL
RGGLFALSMVPNSVTIDTTWKQYQWVGEFEARHDWFGRPGKVKLLAFATRGRMGGYGDAVNLAQQTGNTPDTGLVRRLAW
RPGVALNLEQEITSDLGVFARASMNDGSKETFEFTDINQSVSAGFSLKGNRWGRPNDTFGAAVVVNGLSRAARQYFAAGG
MGVLIGDGALNYGTERIAELYYNWAAIKHLTLGLNYQYVVHPAYNRDRGPVSIVGARVHAEF

Sequences:

>Translated_462_residues
MPSLPLHVIPRRPFTLMGAVQQATAAFMLVLSLQSAALAAGADTPATDIPEPERWNVHGQFTNVTQWHPSFRSPYSGTNS
LTPDNNTKETVDVTLYLGLRLWKGAELYANPEIDQGFGLSNTVGLAGFSSGEAYKIGNNAPYRKLPRLFLRQVINLGGEQ
QAVESAPNQLAGSRSADNVTITVGKFSVADIFDTNTYAHDPRGDFLNWAVIDAGAFDYAADAWGYTHGLAVEWTQSWWSL
RGGLFALSMVPNSVTIDTTWKQYQWVGEFEARHDWFGRPGKVKLLAFATRGRMGGYGDAVNLAQQTGNTPDTGLVRRLAW
RPGVALNLEQEITSDLGVFARASMNDGSKETFEFTDINQSVSAGFSLKGNRWGRPNDTFGAAVVVNGLSRAARQYFAAGG
MGVLIGDGALNYGTERIAELYYNWAAIKHLTLGLNYQYVVHPAYNRDRGPVSIVGARVHAEF
>Mature_461_residues
PSLPLHVIPRRPFTLMGAVQQATAAFMLVLSLQSAALAAGADTPATDIPEPERWNVHGQFTNVTQWHPSFRSPYSGTNSL
TPDNNTKETVDVTLYLGLRLWKGAELYANPEIDQGFGLSNTVGLAGFSSGEAYKIGNNAPYRKLPRLFLRQVINLGGEQQ
AVESAPNQLAGSRSADNVTITVGKFSVADIFDTNTYAHDPRGDFLNWAVIDAGAFDYAADAWGYTHGLAVEWTQSWWSLR
GGLFALSMVPNSVTIDTTWKQYQWVGEFEARHDWFGRPGKVKLLAFATRGRMGGYGDAVNLAQQTGNTPDTGLVRRLAWR
PGVALNLEQEITSDLGVFARASMNDGSKETFEFTDINQSVSAGFSLKGNRWGRPNDTFGAAVVVNGLSRAARQYFAAGGM
GVLIGDGALNYGTERIAELYYNWAAIKHLTLGLNYQYVVHPAYNRDRGPVSIVGARVHAEF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50481; Mature: 50350

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLPLHVIPRRPFTLMGAVQQATAAFMLVLSLQSAALAAGADTPATDIPEPERWNVHGQ
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
FTNVTQWHPSFRSPYSGTNSLTPDNNTKETVDVTLYLGLRLWKGAELYANPEIDQGFGLS
ECCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCCCCCCCCC
NTVGLAGFSSGEAYKIGNNAPYRKLPRLFLRQVINLGGEQQAVESAPNQLAGSRSADNVT
CCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHCHHHHCCCCCCCEEE
ITVGKFSVADIFDTNTYAHDPRGDFLNWAVIDAGAFDYAADAWGYTHGLAVEWTQSWWSL
EEEECEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEEEEEHHHHHHH
RGGLFALSMVPNSVTIDTTWKQYQWVGEFEARHDWFGRPGKVKLLAFATRGRMGGYGDAV
CCCEEEEEECCCEEEEECCHHHEEEEECHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHH
NLAQQTGNTPDTGLVRRLAWRPGVALNLEQEITSDLGVFARASMNDGSKETFEFTDINQS
HHHHHCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHEEEECCCCCCCCEEEEECCCHH
VSAGFSLKGNRWGRPNDTFGAAVVVNGLSRAARQYFAAGGMGVLIGDGALNYGTERIAEL
HHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
YYNWAAIKHLTLGLNYQYVVHPAYNRDRGPVSIVGARVHAEF
HHHHHHEEEEEECCCEEEEEECCCCCCCCCEEEEEEEEEECC
>Mature Secondary Structure 
PSLPLHVIPRRPFTLMGAVQQATAAFMLVLSLQSAALAAGADTPATDIPEPERWNVHGQ
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
FTNVTQWHPSFRSPYSGTNSLTPDNNTKETVDVTLYLGLRLWKGAELYANPEIDQGFGLS
ECCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCCCCCCCCC
NTVGLAGFSSGEAYKIGNNAPYRKLPRLFLRQVINLGGEQQAVESAPNQLAGSRSADNVT
CCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHCHHHHCCCCCCCEEE
ITVGKFSVADIFDTNTYAHDPRGDFLNWAVIDAGAFDYAADAWGYTHGLAVEWTQSWWSL
EEEECEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEEEEEHHHHHHH
RGGLFALSMVPNSVTIDTTWKQYQWVGEFEARHDWFGRPGKVKLLAFATRGRMGGYGDAV
CCCEEEEEECCCEEEEECCHHHEEEEECHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHH
NLAQQTGNTPDTGLVRRLAWRPGVALNLEQEITSDLGVFARASMNDGSKETFEFTDINQS
HHHHHCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHEEEECCCCCCCCEEEEECCCHH
VSAGFSLKGNRWGRPNDTFGAAVVVNGLSRAARQYFAAGGMGVLIGDGALNYGTERIAEL
HHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
YYNWAAIKHLTLGLNYQYVVHPAYNRDRGPVSIVGARVHAEF
HHHHHHEEEEEECCCEEEEEECCCCCCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA