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The map label for this gene is yciO [H]

Identifier: 187928076

GI number: 187928076

Start: 1038996

End: 1039619

Strand: Direct

Name: yciO [H]

Synonym: Rpic_0983

Alternate gene names: 187928076

Gene position: 1038996-1039619 (Clockwise)

Preceding gene: 187928075

Following gene: 187928077

Centisome position: 26.35

GC content: 67.47

Gene sequence:

>624_bases
ATGTCCCAGTTCTTCCAGATCCACCCGACCACGCCGCAAGGGCGCCTGATTCGCCAGGCGGCGGAGATCATCCGCGCCGG
CGGCCTGGTCGCGCTGCCCACCGATTCCTGCTACGCGCTCGCCTGCCATCTGGACGACAAATCGGCCGTCGAGCGCCTGC
GCCGCGTGCGCGGCATCGACGAAAAGCACCACCTGACATTGATGTGCCGGGACCTTTCCGAGCTGGCCACGTTCGCGCGT
GTCGACAACAAGCAATATCGCGTGCTGAAGGCGGCCACACCGGGGCCGTTCGTCTTCCTGCTGGAGGCGACCAAGGAGGT
GCCGCGCCGGCTTTCGCACCCGTCGCGCAAGACGATCGGCCTGCGCGTACCGGAACACGCGATTCCCCTGGCGCTGATGG
CGGAACTGGGTGAGCCGCTGCTCTCCGCCACGCTGCAACTGCCCGGCGATGACGAACCCCTCAACGAGGCCGAGACCATT
CGGGATCGGCTTGAAAAGCAGCTTGAACTCGTCATCGACGGCGGCCCGGCCCCGGCCGAACCCACCACCGTCATCGACCT
GACGAGCGGCGAGCCCGAACTTGTGCGCCAAGGCCGGGGTGATCCGGCTCGCGTGGGCCTGTAG

Upstream 100 bases:

>100_bases
GGCCCCGGCGAGGGCCGCGTCGAACTCGGCACACTGCCGCCGCTGCCCGACAACCTGACGCCGGTGTGGAGCCGGTGGAT
GTCCTGAGCGCGCGGCTGCC

Downstream 100 bases:

>100_bases
GCGAGCCCTTGGCGCGTGCTTCGGTGGCGCCGTGCCGCGGCGCGCGCTTGCTACAATAGCTCGCTTATGGACCCCACACT
GATCCAGAACATCGCGGTTT

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSQFFQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHHLTLMCRDLSELATFAR
VDNKQYRVLKAATPGPFVFLLEATKEVPRRLSHPSRKTIGLRVPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETI
RDRLEKQLELVIDGGPAPAEPTTVIDLTSGEPELVRQGRGDPARVGL

Sequences:

>Translated_207_residues
MSQFFQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHHLTLMCRDLSELATFAR
VDNKQYRVLKAATPGPFVFLLEATKEVPRRLSHPSRKTIGLRVPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETI
RDRLEKQLELVIDGGPAPAEPTTVIDLTSGEPELVRQGRGDPARVGL
>Mature_206_residues
SQFFQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHHLTLMCRDLSELATFARV
DNKQYRVLKAATPGPFVFLLEATKEVPRRLSHPSRKTIGLRVPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIR
DRLEKQLELVIDGGPAPAEPTTVIDLTSGEPELVRQGRGDPARVGL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=190, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87081864, Length=201, Percent_Identity=55.7213930348259, Blast_Score=236, Evalue=1e-63,
Organism=Drosophila melanogaster, GI78707274, Length=185, Percent_Identity=29.1891891891892, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22786; Mature: 22654

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKSAVERLRRVRGID
CCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCHHHHHHHHHHHCCC
EKHHLTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLEATKEVPRRLSHPSRKTIG
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHCCCCCCEEE
LRVPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGGPAPAE
EECCCHHHHHHHHHHHCCHHHHHEEECCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCC
PTTVIDLTSGEPELVRQGRGDPARVGL
CCEEEEECCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SQFFQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKSAVERLRRVRGID
CCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCHHHHHHHHHHHCCC
EKHHLTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLEATKEVPRRLSHPSRKTIG
CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHCCCCCCEEE
LRVPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGGPAPAE
EECCCHHHHHHHHHHHCCHHHHHEEECCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCC
PTTVIDLTSGEPELVRQGRGDPARVGL
CCEEEEECCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]