| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is comA [H]
Identifier: 187928056
GI number: 187928056
Start: 1019233
End: 1021755
Strand: Direct
Name: comA [H]
Synonym: Rpic_0963
Alternate gene names: 187928056
Gene position: 1019233-1021755 (Clockwise)
Preceding gene: 187928055
Following gene: 187928057
Centisome position: 25.85
GC content: 66.71
Gene sequence:
>2523_bases ATGCGTCTCGGGTTGATCGGCTTTGTTGCCGGCTGCGTGGCATTGCAGATGCAGGCGACGCTGCTGCCGGTGTGGCTGCC GCTTGGCGTGCTGGTGCTCTGTCTGTCGCTGGCCGGTGCCACGCGGCGTCGGCTGATGCTGTTTCCTGTGTTGCTCGTCG CCAGCACCATCGCGGCGGGCTTTGGCTGGAGCGATTGGCGTGCGCAGCAGCGCATGGCGGTGGCACTCAGCCCCGCGTGC GAAGGCAAGGACATCATAGCGACCGGCGTGGTGGCTGAGTTGCCGCAGACCGGTGATGACGCCACGCGCTTTCTCTTTCA CATCGAATCCAGCAATGCGGGTGATACCGTGCCGCCCCGCGTGCGCCTGTCCTGGTATGGCCCACGCACGTGGGGCAACG TGGGCGAGGAAGATGCGAAGCCGGACCGACGCGCTGGCATCCCCGATCTGCAGCCCGGCCAACGCTGGCAACTGACGCTG CGCCTAAAGCGCCCGCACAGCCTGACCAACCCCGGCGGCTTCGATGGCGAATACGCGATGCTGGCCGACAACATCCGGGC CGTCGGCTATGTGCGTACAGGCAAGCGCGCGCAGAACATCGCGCTTGGCGAGGCGAGCGCCGGTTTCGGAATTGGCGTGG AGCGCTGGCGTGCCAGCGTGCGGCGCCACATCCTCGATGCCCTGCCCGATGGGCGCTACGCGGCTGTCATTGTCGCCCTG GTGGTGGGCGACCAGAGCGGCATCGCTCCCGACGACTGGGACCTGTTCCGCCGCACCGGCATCAGCCACCTCGTCAGCAT TTCGGGGCTGCACATCACGATGATCGCCGGGCTGTTTGCAGCGTTGTGGATGGCGCTGTGGCGTCGCTCGTTCTGGCTGG CGCGCTGGCTGCGTACGCCGTTGCCGCTGCGCATGCCGGCCCCGCGCGCAGGCGCCATCGCGGCCATGCTGGCTGCGTTC GCCTACTGCCTGCTCGTCGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCTCCACCGTAGCCATCGCCCGGCT GACCGATCGGAATGTGCCCGCCAGCCTGTCGCTGTGCTGGGCGGCGGCCGTGGTGGCGGTGGTGGACCCGTGGGCCGTCA TGTCGGCGGGGTTCTGGCTGTCGTTCGGCGCGGTGGCGATCATCTTCATCGCCGCGCAGATGGCGCTCGATGGCCATCGC AGTGACAACCCAGATGGCTGGGTCGAACGCACGCGCCGTGCGCTCGCTGGCGGTACGCGGATTCAGTTCGCGGTCACATT CGGGCTATTGCCTTTGACTTTGCTGCTGTTCCAGCAGACGTCGGTCGTCTCTGCTGCGGCGAATGGGCTGGCGATTCCCG CGGTGAGTTTCATGACGACACCGCTGGCGCTGATCGGCGCGGCTCTCCCGGACCCGCTAGCGCAGCCAGTGCTGATGTTG GCCGAAGCGAGCTTCCGGTGGCTGGTCGTATGGCTTGAATGGCTGGCGAAGCCGCGCTGGTCTGTGTGGGTTGCGCCGGT TGGACCCATGTGGGCAGTGTTGCTGTCGATGGTTGCGGTGGCGCTATTGCTGGTGCCGGGTGGCTTGCGCGCATGGGTGT GGCGCGCTCAGGGTGCCTTGCTCCTCTTGCCGTTGGTACTGGCGCGCGAGCCATTGCCATCGCCTGGCGAATTCCGGCTC GTCGCGTTCGACATCGGCCAGGGCGCTGCGGCCTTGGTTGAAACGGCCAACCATCGCCTGCTGTTCGACACCGGCCCGCG CTACGGCGACCATGCCGATGCCGCCGCCCGCGTCATCGCTCCCTATCTGCGAGCACATGGCGTGGAAGCGCTCGACACGC TTGCCGTCAGCCACGAAGACAACGACCACGCCGGTGGCACCGAAACGGTGATCGGCGCGGTGCCGGTGCGCACCATGTTG GCGTCTTTGCCTCCGGGGCACGCCCTGCGCGGCACGGCCGATGCCAACAACATCGGTTTTGCCGATTGTTTGGCTGGGCA AGCATGGACGTGGGACGGCGTTGTCTTTGAGGTGCTGCACCCGCGGCGTTTGCCGGCTGAAAGCGAGCGCGTGTCCAGCA ACGCCCGCAGTTGTGTGCTGCGTATCGCCAATGGCCGCCACGCCGCCTTGCTGACCGGCGATATCGAAGCCGCCCAGGAA AGCGCGCTGATCGACGCAGAAACGCCTGAGCGACTGATGGCAGACATCTTGCTTGTGCCTCATCACGGCAGCAAGACAAG CTCCAGCGGCGCGTTCCTGAACGCGGTTTCTCCGCAAGTGGCGGTTTTCCAGGTCGGCTACCGCAATCGGTACGGACATC CGCATCCGCAGATTTGGCAGCGCTACGTAGCGCGCGACATCGACGGGTTGCGCACGGACAAGACCGGTGCCGTCGTCATT CAGACCGACGGCGATGTGCTGGACATCCAGACCGCGCGCAAAATGCGGCCGCGGTACTGGTCTTCCGCACAGGAAGTGGA ACCCCTGGCAACGGCCACCGGCGCCTTCGACGCCCAGCCGTGA
Upstream 100 bases:
>100_bases GCGCGGCATCTCCATTGAGGCGCTGGCCTACCAGGCGCGCCGCAACAGCATCGACGCCATTCCCCGCCTGGAAGCGCTCC TGCAAGCCTGACGCCCGCAC
Downstream 100 bases:
>100_bases AAACTTGGTGGCACAACGGGTTGGCCCCATTGTGGCGGTCAAAACCGCTGTGCTATAAAAACCGCGTGCCGCGTACATCG CGCGGCGCCGTCAGGGGAGG
Product: DNA internalization-related competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 840; Mature: 840
Protein sequence:
>840_residues MRLGLIGFVAGCVALQMQATLLPVWLPLGVLVLCLSLAGATRRRLMLFPVLLVASTIAAGFGWSDWRAQQRMAVALSPAC EGKDIIATGVVAELPQTGDDATRFLFHIESSNAGDTVPPRVRLSWYGPRTWGNVGEEDAKPDRRAGIPDLQPGQRWQLTL RLKRPHSLTNPGGFDGEYAMLADNIRAVGYVRTGKRAQNIALGEASAGFGIGVERWRASVRRHILDALPDGRYAAVIVAL VVGDQSGIAPDDWDLFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFWLARWLRTPLPLRMPAPRAGAIAAMLAAF AYCLLVGMGVPAQRTLLMLSTVAIARLTDRNVPASLSLCWAAAVVAVVDPWAVMSAGFWLSFGAVAIIFIAAQMALDGHR SDNPDGWVERTRRALAGGTRIQFAVTFGLLPLTLLLFQQTSVVSAAANGLAIPAVSFMTTPLALIGAALPDPLAQPVLML AEASFRWLVVWLEWLAKPRWSVWVAPVGPMWAVLLSMVAVALLLVPGGLRAWVWRAQGALLLLPLVLAREPLPSPGEFRL VAFDIGQGAAALVETANHRLLFDTGPRYGDHADAAARVIAPYLRAHGVEALDTLAVSHEDNDHAGGTETVIGAVPVRTML ASLPPGHALRGTADANNIGFADCLAGQAWTWDGVVFEVLHPRRLPAESERVSSNARSCVLRIANGRHAALLTGDIEAAQE SALIDAETPERLMADILLVPHHGSKTSSSGAFLNAVSPQVAVFQVGYRNRYGHPHPQIWQRYVARDIDGLRTDKTGAVVI QTDGDVLDIQTARKMRPRYWSSAQEVEPLATATGAFDAQP
Sequences:
>Translated_840_residues MRLGLIGFVAGCVALQMQATLLPVWLPLGVLVLCLSLAGATRRRLMLFPVLLVASTIAAGFGWSDWRAQQRMAVALSPAC EGKDIIATGVVAELPQTGDDATRFLFHIESSNAGDTVPPRVRLSWYGPRTWGNVGEEDAKPDRRAGIPDLQPGQRWQLTL RLKRPHSLTNPGGFDGEYAMLADNIRAVGYVRTGKRAQNIALGEASAGFGIGVERWRASVRRHILDALPDGRYAAVIVAL VVGDQSGIAPDDWDLFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFWLARWLRTPLPLRMPAPRAGAIAAMLAAF AYCLLVGMGVPAQRTLLMLSTVAIARLTDRNVPASLSLCWAAAVVAVVDPWAVMSAGFWLSFGAVAIIFIAAQMALDGHR SDNPDGWVERTRRALAGGTRIQFAVTFGLLPLTLLLFQQTSVVSAAANGLAIPAVSFMTTPLALIGAALPDPLAQPVLML AEASFRWLVVWLEWLAKPRWSVWVAPVGPMWAVLLSMVAVALLLVPGGLRAWVWRAQGALLLLPLVLAREPLPSPGEFRL VAFDIGQGAAALVETANHRLLFDTGPRYGDHADAAARVIAPYLRAHGVEALDTLAVSHEDNDHAGGTETVIGAVPVRTML ASLPPGHALRGTADANNIGFADCLAGQAWTWDGVVFEVLHPRRLPAESERVSSNARSCVLRIANGRHAALLTGDIEAAQE SALIDAETPERLMADILLVPHHGSKTSSSGAFLNAVSPQVAVFQVGYRNRYGHPHPQIWQRYVARDIDGLRTDKTGAVVI QTDGDVLDIQTARKMRPRYWSSAQEVEPLATATGAFDAQP >Mature_840_residues MRLGLIGFVAGCVALQMQATLLPVWLPLGVLVLCLSLAGATRRRLMLFPVLLVASTIAAGFGWSDWRAQQRMAVALSPAC EGKDIIATGVVAELPQTGDDATRFLFHIESSNAGDTVPPRVRLSWYGPRTWGNVGEEDAKPDRRAGIPDLQPGQRWQLTL RLKRPHSLTNPGGFDGEYAMLADNIRAVGYVRTGKRAQNIALGEASAGFGIGVERWRASVRRHILDALPDGRYAAVIVAL VVGDQSGIAPDDWDLFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFWLARWLRTPLPLRMPAPRAGAIAAMLAAF AYCLLVGMGVPAQRTLLMLSTVAIARLTDRNVPASLSLCWAAAVVAVVDPWAVMSAGFWLSFGAVAIIFIAAQMALDGHR SDNPDGWVERTRRALAGGTRIQFAVTFGLLPLTLLLFQQTSVVSAAANGLAIPAVSFMTTPLALIGAALPDPLAQPVLML AEASFRWLVVWLEWLAKPRWSVWVAPVGPMWAVLLSMVAVALLLVPGGLRAWVWRAQGALLLLPLVLAREPLPSPGEFRL VAFDIGQGAAALVETANHRLLFDTGPRYGDHADAAARVIAPYLRAHGVEALDTLAVSHEDNDHAGGTETVIGAVPVRTML ASLPPGHALRGTADANNIGFADCLAGQAWTWDGVVFEVLHPRRLPAESERVSSNARSCVLRIANGRHAALLTGDIEAAQE SALIDAETPERLMADILLVPHHGSKTSSSGAFLNAVSPQVAVFQVGYRNRYGHPHPQIWQRYVARDIDGLRTDKTGAVVI QTDGDVLDIQTARKMRPRYWSSAQEVEPLATATGAFDAQP
Specific function: Essential for natural transformation. Could be a transporter involved in DNA uptake [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, H.influenzae REC2, and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=678, Percent_Identity=28.1710914454277, Blast_Score=209, Evalue=5e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 90522; Mature: 90522
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLGLIGFVAGCVALQMQATLLPVWLPLGVLVLCLSLAGATRRRLMLFPVLLVASTIAAG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC FGWSDWRAQQRMAVALSPACEGKDIIATGVVAELPQTGDDATRFLFHIESSNAGDTVPPR CCCHHHHHHHCEEEEECCCCCCCCEEEHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCC VRLSWYGPRTWGNVGEEDAKPDRRAGIPDLQPGQRWQLTLRLKRPHSLTNPGGFDGEYAM EEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHH LADNIRAVGYVRTGKRAQNIALGEASAGFGIGVERWRASVRRHILDALPDGRYAAVIVAL HHCCCCEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEE VVGDQSGIAPDDWDLFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFWLARWLRTP EECCCCCCCCCHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LPLRMPAPRAGAIAAMLAAFAYCLLVGMGVPAQRTLLMLSTVAIARLTDRNVPASLSLCW CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH AAAVVAVVDPWAVMSAGFWLSFGAVAIIFIAAQMALDGHRSDNPDGWVERTRRALAGGTR HHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCE IQFAVTFGLLPLTLLLFQQTSVVSAAANGLAIPAVSFMTTPLALIGAALPDPLAQPVLML EEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH AEASFRWLVVWLEWLAKPRWSVWVAPVGPMWAVLLSMVAVALLLVPGGLRAWVWRAQGAL HHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHH LLLPLVLAREPLPSPGEFRLVAFDIGQGAAALVETANHRLLFDTGPRYGDHADAAARVIA HHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH PYLRAHGVEALDTLAVSHEDNDHAGGTETVIGAVPVRTMLASLPPGHALRGTADANNIGF HHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCH ADCLAGQAWTWDGVVFEVLHPRRLPAESERVSSNARSCVLRIANGRHAALLTGDIEAAQE HHHHCCCCEECCCCCEEHHCCCCCCCHHHHHHCCHHEEEEEECCCCEEEEEECCHHHHHH SALIDAETPERLMADILLVPHHGSKTSSSGAFLNAVSPQVAVFQVGYRNRYGHPHPQIWQ HCEECCCCHHHHHHHEEEECCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHH RYVARDIDGLRTDKTGAVVIQTDGDVLDIQTARKMRPRYWSSAQEVEPLATATGAFDAQP HHHHHHCCCCCCCCCCEEEEECCCCEEECHHHHHCCCHHCCCHHHCCHHHHHCCCCCCCC >Mature Secondary Structure MRLGLIGFVAGCVALQMQATLLPVWLPLGVLVLCLSLAGATRRRLMLFPVLLVASTIAAG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC FGWSDWRAQQRMAVALSPACEGKDIIATGVVAELPQTGDDATRFLFHIESSNAGDTVPPR CCCHHHHHHHCEEEEECCCCCCCCEEEHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCC VRLSWYGPRTWGNVGEEDAKPDRRAGIPDLQPGQRWQLTLRLKRPHSLTNPGGFDGEYAM EEEEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHH LADNIRAVGYVRTGKRAQNIALGEASAGFGIGVERWRASVRRHILDALPDGRYAAVIVAL HHCCCCEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEE VVGDQSGIAPDDWDLFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFWLARWLRTP EECCCCCCCCCHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LPLRMPAPRAGAIAAMLAAFAYCLLVGMGVPAQRTLLMLSTVAIARLTDRNVPASLSLCW CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH AAAVVAVVDPWAVMSAGFWLSFGAVAIIFIAAQMALDGHRSDNPDGWVERTRRALAGGTR HHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCE IQFAVTFGLLPLTLLLFQQTSVVSAAANGLAIPAVSFMTTPLALIGAALPDPLAQPVLML EEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH AEASFRWLVVWLEWLAKPRWSVWVAPVGPMWAVLLSMVAVALLLVPGGLRAWVWRAQGAL HHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHH LLLPLVLAREPLPSPGEFRLVAFDIGQGAAALVETANHRLLFDTGPRYGDHADAAARVIA HHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH PYLRAHGVEALDTLAVSHEDNDHAGGTETVIGAVPVRTMLASLPPGHALRGTADANNIGF HHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCH ADCLAGQAWTWDGVVFEVLHPRRLPAESERVSSNARSCVLRIANGRHAALLTGDIEAAQE HHHHCCCCEECCCCCEEHHCCCCCCCHHHHHHCCHHEEEEEECCCCEEEEEECCHHHHHH SALIDAETPERLMADILLVPHHGSKTSSSGAFLNAVSPQVAVFQVGYRNRYGHPHPQIWQ HCEECCCCHHHHHHHEEEECCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCHHHHH RYVARDIDGLRTDKTGAVVIQTDGDVLDIQTARKMRPRYWSSAQEVEPLATATGAFDAQP HHHHHHCCCCCCCCCCEEEEECCCCEEECHHHHHCCCHHCCCHHHCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934834; 8830266 [H]