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The map label for this gene is yjjV [H]

Identifier: 187928055

GI number: 187928055

Start: 1018411

End: 1019223

Strand: Direct

Name: yjjV [H]

Synonym: Rpic_0962

Alternate gene names: 187928055

Gene position: 1018411-1019223 (Clockwise)

Preceding gene: 187928054

Following gene: 187928056

Centisome position: 25.83

GC content: 63.96

Gene sequence:

>813_bases
ATGTGGATCGATACCCATTGCCACCTCGATGCCAGCGACTTTGATGCCGACCGTGATGCGGTCGTCGCGCAGGCGCATGC
AGCGGGTGTCAACCACATCGTCGTGCCGGCGGTGGCACGCTGGAATTTCGACGCGGTGCGGGCGCTGGCACATCGGCATG
CCGGTTGCAGTTATGCGCTGGGCATCCATCCGATCTACGCCGCGCAGGCCAGTGAAGAGGACCTCCTCGAGCTGCGCCGC
CAAGTCGCCGCGTCAATGGACGACCCGCGCTTTGTGGCGGTCGGCGAGATCGGCCTCGATTTCTTCATTCCCAACTACGA
CATTGAACGGCAGAACGCCGTGTTCCGTGCGCAACTGCGCATCGCTCGCGAATTCGACCTGCCTGTGCTGATGCACGTGC
GCAAGTCGCAAGATCAGGTACAGAGCGCCGCGGCCAAGGCGGGTGTACGCGGCATTGCGCATGCGTTCAACGGCAGCCCG
GAACAGGCGCATCGCTTTGTCGATTCCGGTTTCAAGCTGGGGTTTGGCGGCGTCTTTACCTTTTCGCGCGCCAATCGCGT
GCGTCGGCTGGCGCAGGAATTGCCGATCGAGTCGATCGTGCTGGAAACCGACGCGCCTGACCTCGCGCCAGCCTGGCTGG
CCGATGATCAATTCGGGGAGCAGGGCGGTGTGCGCAATGTACCCACGGAAGTCGCGCGCATTGCCGATGCGATGGCGCAA
CTGCGCGGCATCTCCATTGAGGCGCTGGCCTACCAGGCGCGCCGCAACAGCATCGACGCCATTCCCCGCCTGGAAGCGCT
CCTGCAAGCCTGA

Upstream 100 bases:

>100_bases
GCACCAGGAGCGCTAAGCCGGCCGGCATGATCGGAAAAGGCGGATTCCACAAGACCGCGCTTTCCGGTAGGTTGCCGCTT
TCCCCAATGCTGAACCGACC

Downstream 100 bases:

>100_bases
CGCCCGCACATGCGTCTCGGGTTGATCGGCTTTGTTGCCGGCTGCGTGGCATTGCAGATGCAGGCGACGCTGCTGCCGGT
GTGGCTGCCGCTTGGCGTGC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MWIDTHCHLDASDFDADRDAVVAQAHAAGVNHIVVPAVARWNFDAVRALAHRHAGCSYALGIHPIYAAQASEEDLLELRR
QVAASMDDPRFVAVGEIGLDFFIPNYDIERQNAVFRAQLRIAREFDLPVLMHVRKSQDQVQSAAAKAGVRGIAHAFNGSP
EQAHRFVDSGFKLGFGGVFTFSRANRVRRLAQELPIESIVLETDAPDLAPAWLADDQFGEQGGVRNVPTEVARIADAMAQ
LRGISIEALAYQARRNSIDAIPRLEALLQA

Sequences:

>Translated_270_residues
MWIDTHCHLDASDFDADRDAVVAQAHAAGVNHIVVPAVARWNFDAVRALAHRHAGCSYALGIHPIYAAQASEEDLLELRR
QVAASMDDPRFVAVGEIGLDFFIPNYDIERQNAVFRAQLRIAREFDLPVLMHVRKSQDQVQSAAAKAGVRGIAHAFNGSP
EQAHRFVDSGFKLGFGGVFTFSRANRVRRLAQELPIESIVLETDAPDLAPAWLADDQFGEQGGVRNVPTEVARIADAMAQ
LRGISIEALAYQARRNSIDAIPRLEALLQA
>Mature_270_residues
MWIDTHCHLDASDFDADRDAVVAQAHAAGVNHIVVPAVARWNFDAVRALAHRHAGCSYALGIHPIYAAQASEEDLLELRR
QVAASMDDPRFVAVGEIGLDFFIPNYDIERQNAVFRAQLRIAREFDLPVLMHVRKSQDQVQSAAAKAGVRGIAHAFNGSP
EQAHRFVDSGFKLGFGGVFTFSRANRVRRLAQELPIESIVLETDAPDLAPAWLADDQFGEQGGVRNVPTEVARIADAMAQ
LRGISIEALAYQARRNSIDAIPRLEALLQA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=280, Percent_Identity=30.7142857142857, Blast_Score=117, Evalue=8e-27,
Organism=Homo sapiens, GI226061853, Length=285, Percent_Identity=29.4736842105263, Blast_Score=114, Evalue=9e-26,
Organism=Homo sapiens, GI110349734, Length=280, Percent_Identity=30.3571428571429, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI226061614, Length=269, Percent_Identity=30.4832713754647, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=30.0884955752212, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI225903424, Length=254, Percent_Identity=24.8031496062992, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI87082439, Length=243, Percent_Identity=38.2716049382716, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1787342, Length=256, Percent_Identity=30.859375, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI48994985, Length=248, Percent_Identity=32.258064516129, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=25.6603773584906, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17559024, Length=218, Percent_Identity=27.9816513761468, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24586117, Length=286, Percent_Identity=23.0769230769231, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI221330018, Length=286, Percent_Identity=23.0769230769231, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648690, Length=218, Percent_Identity=27.0642201834862, Blast_Score=68, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29653; Mature: 29653

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDASDFDADRDAVVAQAHAAGVNHIVVPAVARWNFDAVRALAHRHAGCSYAL
CEECCEECCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHCCCCEEEE
GIHPIYAAQASEEDLLELRRQVAASMDDPRFVAVGEIGLDFFIPNYDIERQNAVFRAQLR
CCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHH
IAREFDLPVLMHVRKSQDQVQSAAAKAGVRGIAHAFNGSPEQAHRFVDSGFKLGFGGVFT
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCEEH
FSRANRVRRLAQELPIESIVLETDAPDLAPAWLADDQFGEQGGVRNVPTEVARIADAMAQ
HHHHHHHHHHHHHCCHHEEEEECCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
LRGISIEALAYQARRNSIDAIPRLEALLQA
HHCCCHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MWIDTHCHLDASDFDADRDAVVAQAHAAGVNHIVVPAVARWNFDAVRALAHRHAGCSYAL
CEECCEECCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHCCCCEEEE
GIHPIYAAQASEEDLLELRRQVAASMDDPRFVAVGEIGLDFFIPNYDIERQNAVFRAQLR
CCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHH
IAREFDLPVLMHVRKSQDQVQSAAAKAGVRGIAHAFNGSPEQAHRFVDSGFKLGFGGVFT
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCEEH
FSRANRVRRLAQELPIESIVLETDAPDLAPAWLADDQFGEQGGVRNVPTEVARIADAMAQ
HHHHHHHHHHHHHCCHHEEEEECCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
LRGISIEALAYQARRNSIDAIPRLEALLQA
HHCCCHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]