Click here to switch to the map view.

The map label for this gene is recJ [H]

Identifier: 187928051

GI number: 187928051

Start: 1013497

End: 1015191

Strand: Reverse

Name: recJ [H]

Synonym: Rpic_0958

Alternate gene names: 187928051

Gene position: 1015191-1013497 (Counterclockwise)

Preceding gene: 187928052

Following gene: 187928050

Centisome position: 25.75

GC content: 68.2

Gene sequence:

>1695_bases
ATGACCCGCATCGCTGTCCGCTCACATTCCGCTGACGCCGCCACCACGCTGGCCGGCCACGGCATCCATCCTGTCCTGGC
GCGCATCCTCGCTGCCCGGGGCGTCGCCCGGCCAGACGAACTGTCGACCGAGCTGACGGACCTGCTGCCCCCCGCGCAGC
TCAAGGGCATTGACGACGCAGCGCGCTACCTGGGCGACGCCATCGCCGCCGGCAAGCGCATGCTGATCATCGCCGACTAC
GACTGCGACGGAGCCACCGCGTGCGCCGTCGGCGTGCGCGGCTTGCGCATGCTGGGTGCGCAGGTCAGCTACATCGTCCC
GAACCGCTTCGAGTACGGCTACGGCCTGTCGCCCGAAATCGTGGCACTCGCCGCGCGCGAGAAGCCGGACGTGCTGGTCA
CCGTCGACAACGGCATCGCAGATGTGGCGGGCGTGGCGGCGGCCAACGCGCTGGGCATCGACGTGGTCGTGACGGACCAC
CACATGCCCGGGGCGCAGTTGCCCGAGGCGCGCGTGATCGTCAATCCGAACCAGCCGGGCTGCGACTTCCCGAGCAAGAA
CCTGGCGGGCGTGGGCGTGATGTTCTACGTGCTGCTGGCACTGCGGGCGGAATTGCGCAAGCGCGGTGTGTTCACGCCGC
AGGATCAGCCACGCCTCGATGCCCTGCTCGACCTGGTGGCCCTCGGCACCGTGGCCGACGTGGTCAAGCTCGACGCCAAC
AACCGCCTGCTGGTCGCGCAGGGCCTCAGGCGCATGCGTGCCGGACGCATGTGCCCGGGCATCGCCGCGCTGTTCCGCGT
GGCCGGTCGCGATGCGCGCCGCGCGTCGACGTTCGACCTCGGCTTCGGCCTCGGCCCGCGCCTGAATGCCGCCGGGCGCC
TTGCCGACATGTCGCTCGGCATCGAATGCCTGCTCACCGACGACTACGACCGCGCCATGTCCATCGCCGCCGAACTTGAC
GGCATGAACCGCGAGCGCCGCGAGATCGAAGCCGGCATGCAGCAGGAAGCGCTCGCCATCCTCGACAGCATGAACGCCAT
CGATGGCGCCGGCCGCCACACCATCGCGGTCTACAACGAGACGTGGCACCAGGGCGTGATTGGCATCGTCGCGTCGCGCA
TCAAGGACAAGTTCCACCGCCCGGTGTTCACCTTCGCGCCCGGCGACGACGGCGTCATCAAGGGGTCGGGCCGTTCGATT
CCAGGCTTCCACCTGCGCGATGCGCTGGACGCCGTCCACAAGCGCTGCCCCGGGCTGATCGTCAAGTTCGGGGGCCACGC
CATGGCAGCGGGGCTCACGCTGCGTGAAGACGGCTTCGAGACATTCGTCGCCACCTTCGAGGCCGTCGGCCGCGAATGGT
TGACCGAGGCGCTGCTCTCGCGCGTGCTCGAAACCGATGGCGAAGCCGACCCCGAATGTTTCACGCCGCAGTTCGTCGAG
CTGCTCGAAACCCAGGTCTGGGGCCAGGGCTTTCCGGCGCCAAGCTTCTGCGGCGAGTTCGACGTGCTATCGCAGGCGGT
GCTGAAAGACAAGCACCTGAAGCTCAAGCTCGGCCGCGGCAAGCAGCATTTCGACGCGATCTGGTTCAACCACGCAGAGC
CGCTCGGCGCCTCGGCGTACGTGGCCTACCGGCTCGACAACAACACGTTCAATGGCATCACGCGCGTGCAGATGGTGATC
GAGCACGCGCAATAG

Upstream 100 bases:

>100_bases
CGCCAATGGCCCGTTCGGCTGGCTGCGCCGCTTCAGTCGCCCGCGCAGCTTGCGCGACGCGCTGTCCCCGCTTTCCATGG
CCGCTTGAGCCTGATCCTGC

Downstream 100 bases:

>100_bases
CGGATTGGACAAACCTTGCGCCAACGCATAAATACATGCCAAAACTGTCTGACGGTGCGAAGATGACGCAGCAATCGGGC
ACGGCCGGTGCGTTACAATG

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 563

Protein sequence:

>564_residues
MTRIAVRSHSADAATTLAGHGIHPVLARILAARGVARPDELSTELTDLLPPAQLKGIDDAARYLGDAIAAGKRMLIIADY
DCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEIVALAAREKPDVLVTVDNGIADVAGVAAANALGIDVVVTDH
HMPGAQLPEARVIVNPNQPGCDFPSKNLAGVGVMFYVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDAN
NRLLVAQGLRRMRAGRMCPGIAALFRVAGRDARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDYDRAMSIAAELD
GMNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNETWHQGVIGIVASRIKDKFHRPVFTFAPGDDGVIKGSGRSI
PGFHLRDALDAVHKRCPGLIVKFGGHAMAAGLTLREDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVE
LLETQVWGQGFPAPSFCGEFDVLSQAVLKDKHLKLKLGRGKQHFDAIWFNHAEPLGASAYVAYRLDNNTFNGITRVQMVI
EHAQ

Sequences:

>Translated_564_residues
MTRIAVRSHSADAATTLAGHGIHPVLARILAARGVARPDELSTELTDLLPPAQLKGIDDAARYLGDAIAAGKRMLIIADY
DCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEIVALAAREKPDVLVTVDNGIADVAGVAAANALGIDVVVTDH
HMPGAQLPEARVIVNPNQPGCDFPSKNLAGVGVMFYVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDAN
NRLLVAQGLRRMRAGRMCPGIAALFRVAGRDARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDYDRAMSIAAELD
GMNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNETWHQGVIGIVASRIKDKFHRPVFTFAPGDDGVIKGSGRSI
PGFHLRDALDAVHKRCPGLIVKFGGHAMAAGLTLREDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVE
LLETQVWGQGFPAPSFCGEFDVLSQAVLKDKHLKLKLGRGKQHFDAIWFNHAEPLGASAYVAYRLDNNTFNGITRVQMVI
EHAQ
>Mature_563_residues
TRIAVRSHSADAATTLAGHGIHPVLARILAARGVARPDELSTELTDLLPPAQLKGIDDAARYLGDAIAAGKRMLIIADYD
CDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEIVALAAREKPDVLVTVDNGIADVAGVAAANALGIDVVVTDHH
MPGAQLPEARVIVNPNQPGCDFPSKNLAGVGVMFYVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDANN
RLLVAQGLRRMRAGRMCPGIAALFRVAGRDARRASTFDLGFGLGPRLNAAGRLADMSLGIECLLTDDYDRAMSIAAELDG
MNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNETWHQGVIGIVASRIKDKFHRPVFTFAPGDDGVIKGSGRSIP
GFHLRDALDAVHKRCPGLIVKFGGHAMAAGLTLREDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVEL
LETQVWGQGFPAPSFCGEFDVLSQAVLKDKHLKLKLGRGKQHFDAIWFNHAEPLGASAYVAYRLDNNTFNGITRVQMVIE
HAQ

Specific function: Single-stranded-DNA-specific exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products whi

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=571, Percent_Identity=47.8108581436077, Blast_Score=501, Evalue=1e-143,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 60768; Mature: 60637

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIAVRSHSADAATTLAGHGIHPVLARILAARGVARPDELSTELTDLLPPAQLKGIDDA
CCEEEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCCHHH
ARYLGDAIAAGKRMLIIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEI
HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHH
VALAAREKPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPG
EEEEECCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCC
CDFPSKNLAGVGVMFYVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDAN
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCC
NRLLVAQGLRRMRAGRMCPGIAALFRVAGRDARRASTFDLGFGLGPRLNAAGRLADMSLG
CEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCEECCCC
IECLLTDDYDRAMSIAAELDGMNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNE
EEEEEECCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEEECC
TWHQGVIGIVASRIKDKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLI
CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEE
VKFGGHAMAAGLTLREDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVE
EEECCCEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
LLETQVWGQGFPAPSFCGEFDVLSQAVLKDKHLKLKLGRGKQHFDAIWFNHAEPLGASAY
HHHHHHCCCCCCCCHHCCCHHHHHHHHHCCCCEEEEECCCCCHHHEEEECCCCCCCCCEE
VAYRLDNNTFNGITRVQMVIEHAQ
EEEEECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TRIAVRSHSADAATTLAGHGIHPVLARILAARGVARPDELSTELTDLLPPAQLKGIDDA
CEEEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCCHHH
ARYLGDAIAAGKRMLIIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEI
HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHH
VALAAREKPDVLVTVDNGIADVAGVAAANALGIDVVVTDHHMPGAQLPEARVIVNPNQPG
EEEEECCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEECCCCCC
CDFPSKNLAGVGVMFYVLLALRAELRKRGVFTPQDQPRLDALLDLVALGTVADVVKLDAN
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCC
NRLLVAQGLRRMRAGRMCPGIAALFRVAGRDARRASTFDLGFGLGPRLNAAGRLADMSLG
CEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCEECCCC
IECLLTDDYDRAMSIAAELDGMNRERREIEAGMQQEALAILDSMNAIDGAGRHTIAVYNE
EEEEEECCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEEECC
TWHQGVIGIVASRIKDKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLI
CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCEE
VKFGGHAMAAGLTLREDGFETFVATFEAVGREWLTEALLSRVLETDGEADPECFTPQFVE
EEECCCEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
LLETQVWGQGFPAPSFCGEFDVLSQAVLKDKHLKLKLGRGKQHFDAIWFNHAEPLGASAY
HHHHHHCCCCCCCCHHCCCHHHHHHHHHCCCCEEEEECCCCCHHHEEEECCCCCCCCCEE
VAYRLDNNTFNGITRVQMVIEHAQ
EEEEECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8168497 [H]