Click here to switch to the map view.

The map label for this gene is nifU [H]

Identifier: 187927980

GI number: 187927980

Start: 940045

End: 940446

Strand: Direct

Name: nifU [H]

Synonym: Rpic_0885

Alternate gene names: 187927980

Gene position: 940045-940446 (Clockwise)

Preceding gene: 187927979

Following gene: 187927981

Centisome position: 23.84

GC content: 60.95

Gene sequence:

>402_bases
ATGTCTTACAGCAACCAAGTTCTGGACCATTACGAAAACCCGCGCAACGTCGGTTCGTTCGAGAAGGGCGACGACACGGT
CGGCACCGGCATGGTCGGCGCGCCGGCTTGCGGCGACGTGATGAAGCTGCAGATCAAGGTCAACGAGCAGGGCGTGATTG
AAGACGCCAAGTTCAAGACCTACGGCTGCGGTTCGGCCATCGCTTCGTCGTCGCTGGTGACGGAATGGGTGAAGGGCAAG
ACGCTGGATCAGGCGCTGGAAATCCGCAACACGGCCATCGCTGAAGAGCTGGCCCTGCCGCCGGTGAAGATCCACTGCTC
GATTCTGGCCGAAGACGCCATCAAGGCGGCCGTGGCCGACTACAAGGAAAAGCACGGTTCGGCCGAGCAGAAGGCTGCTT
GA

Upstream 100 bases:

>100_bases
ACGGCGTGGATCTGAACAGCATTCAATGGGCGGCGCACTGAGCGCGGCGTTTGAGAACAACGGCGCCCCCGCGCCAGCCA
ACGATTGAAAGAGGTGTGAA

Downstream 100 bases:

>100_bases
GCCGGTTTGGATAGAAAGGACGCAGCATGATCACCCTGACCGACAAGGCCGCGCAGCACGTTTCCCGCTACCTGACCCGC
CGTGGCAAGGGCGTGGGCCT

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSYSNQVLDHYENPRNVGSFEKGDDTVGTGMVGAPACGDVMKLQIKVNEQGVIEDAKFKTYGCGSAIASSSLVTEWVKGK
TLDQALEIRNTAIAEELALPPVKIHCSILAEDAIKAAVADYKEKHGSAEQKAA

Sequences:

>Translated_133_residues
MSYSNQVLDHYENPRNVGSFEKGDDTVGTGMVGAPACGDVMKLQIKVNEQGVIEDAKFKTYGCGSAIASSSLVTEWVKGK
TLDQALEIRNTAIAEELALPPVKIHCSILAEDAIKAAVADYKEKHGSAEQKAA
>Mature_132_residues
SYSNQVLDHYENPRNVGSFEKGDDTVGTGMVGAPACGDVMKLQIKVNEQGVIEDAKFKTYGCGSAIASSSLVTEWVKGKT
LDQALEIRNTAIAEELALPPVKIHCSILAEDAIKAAVADYKEKHGSAEQKAA

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=133, Percent_Identity=71.4285714285714, Blast_Score=200, Evalue=3e-52,
Organism=Homo sapiens, GI24307953, Length=135, Percent_Identity=71.1111111111111, Blast_Score=199, Evalue=4e-52,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=80.8, Blast_Score=220, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17543474, Length=123, Percent_Identity=68.2926829268293, Blast_Score=187, Evalue=1e-48,
Organism=Saccharomyces cerevisiae, GI6325122, Length=126, Percent_Identity=68.2539682539683, Blast_Score=183, Evalue=6e-48,
Organism=Saccharomyces cerevisiae, GI6324800, Length=123, Percent_Identity=68.2926829268293, Blast_Score=182, Evalue=2e-47,
Organism=Drosophila melanogaster, GI21355597, Length=123, Percent_Identity=74.7967479674797, Blast_Score=197, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14184; Mature: 14053

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSNQVLDHYENPRNVGSFEKGDDTVGTGMVGAPACGDVMKLQIKVNEQGVIEDAKFKT
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKTLDQALEIRNTAIAEELALPPVKIHCSILAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKEKHGSAEQKAA
HHHHCCCCCCCCC
>Mature Secondary Structure 
SYSNQVLDHYENPRNVGSFEKGDDTVGTGMVGAPACGDVMKLQIKVNEQGVIEDAKFKT
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKTLDQALEIRNTAIAEELALPPVKIHCSILAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKEKHGSAEQKAA
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]