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The map label for this gene is orn [H]

Identifier: 187927908

GI number: 187927908

Start: 857202

End: 857861

Strand: Direct

Name: orn [H]

Synonym: Rpic_0813

Alternate gene names: 187927908

Gene position: 857202-857861 (Clockwise)

Preceding gene: 187927904

Following gene: 187927911

Centisome position: 21.74

GC content: 60.15

Gene sequence:

>660_bases
GTGAGCACCCCCGCGAGTACCCCTGTTTCCCTGTCCGCCACATCCCTGTCGACCCCCAGCCGCGTTGCCGCCAAGAGCGA
CAACAATCTGGTCTGGCTCGACATGGAGATGACCGGTCTGAGCCCCGAGAACGATCGCATCATCGAAGTGGCCGTGGTAG
TAACGGATTCGGAGCTGAACATCCTGGCTGAAGGCCCGGTGCTGGTGATCCATCAGTCCGACGAGCTGCTTGACGGCATG
GACGCGTGGAACAAGGGCACGCACGGCCGTTCGGGCCTGATCGACAAGGTCAAGGCGTCGACCACGACGGAAGCGGAAGC
GGAAGCGGAACTTCTGGCATTCCTCAAGAAGTGGGTGCCGAAGAGCAAGTCGCCGATGTGCGGCAACTCCATCTGCCAGG
ACCGCCGTTTCATGGCCCGCTACATGCCCAAGCTGGAGGCGTACTTCCATTACCGCAATCTGGATGTCTCCACGCTCAAG
GAACTTTGCAAGCGTTGGCAACCGGCTATTGCCAAGGGTTTTACGAAGCACCAGCGGCACACGGCGTTTGCAGACATCAT
CGAATCGATCGAAGAACTGCGCTATTACCGCGAGCACTTCATCCGCGATGTGCCGCAAACGCCCGACGCTGAAGCACTGG
CATCGTCGGTCGCCCCGTAA

Upstream 100 bases:

>100_bases
AAGGGCGATCAGGAAGACAGCGGTAAAGGCGGGCATGTGGGGAAACACCTATCAGATATGCGAAAATTATAGCCTTCAGT
CATTTTCTCAAGGCCCTTGA

Downstream 100 bases:

>100_bases
GTAAGCATTAAACCTGCTGCGGTTTTGCGCGCACAGCGTGCTTGGGCCGCCAGGCCTTGACCACGCTGTCGTGCGTCTCG
ACGTACGGGCCGCCGATCAG

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSTPASTPVSLSATSLSTPSRVAAKSDNNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNILAEGPVLVIHQSDELLDGM
DAWNKGTHGRSGLIDKVKASTTTEAEAEAELLAFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEAYFHYRNLDVSTLK
ELCKRWQPAIAKGFTKHQRHTAFADIIESIEELRYYREHFIRDVPQTPDAEALASSVAP

Sequences:

>Translated_219_residues
MSTPASTPVSLSATSLSTPSRVAAKSDNNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNILAEGPVLVIHQSDELLDGM
DAWNKGTHGRSGLIDKVKASTTTEAEAEAELLAFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEAYFHYRNLDVSTLK
ELCKRWQPAIAKGFTKHQRHTAFADIIESIEELRYYREHFIRDVPQTPDAEALASSVAP
>Mature_218_residues
STPASTPVSLSATSLSTPSRVAAKSDNNLVWLDMEMTGLSPENDRIIEVAVVVTDSELNILAEGPVLVIHQSDELLDGMD
AWNKGTHGRSGLIDKVKASTTTEAEAEAELLAFLKKWVPKSKSPMCGNSICQDRRFMARYMPKLEAYFHYRNLDVSTLKE
LCKRWQPAIAKGFTKHQRHTAFADIIESIEELRYYREHFIRDVPQTPDAEALASSVAP

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=50.2890173410405, Blast_Score=182, Evalue=3e-46,
Organism=Escherichia coli, GI87082382, Length=177, Percent_Identity=64.9717514124294, Blast_Score=252, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI17557752, Length=183, Percent_Identity=47.5409836065574, Blast_Score=172, Evalue=1e-43,
Organism=Saccharomyces cerevisiae, GI6323088, Length=194, Percent_Identity=39.1752577319588, Blast_Score=135, Evalue=4e-33,
Organism=Drosophila melanogaster, GI21355135, Length=181, Percent_Identity=45.3038674033149, Blast_Score=171, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 24422; Mature: 24291

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPASTPVSLSATSLSTPSRVAAKSDNNLVWLDMEMTGLSPENDRIIEVAVVVTDSELN
CCCCCCCCCEEEECCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCE
ILAEGPVLVIHQSDELLDGMDAWNKGTHGRSGLIDKVKASTTTEAEAEAELLAFLKKWVP
EEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCC
KSKSPMCGNSICQDRRFMARYMPKLEAYFHYRNLDVSTLKELCKRWQPAIAKGFTKHQRH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TAFADIIESIEELRYYREHFIRDVPQTPDAEALASSVAP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
STPASTPVSLSATSLSTPSRVAAKSDNNLVWLDMEMTGLSPENDRIIEVAVVVTDSELN
CCCCCCCCEEEECCCCCCHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCE
ILAEGPVLVIHQSDELLDGMDAWNKGTHGRSGLIDKVKASTTTEAEAEAELLAFLKKWVP
EEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCC
KSKSPMCGNSICQDRRFMARYMPKLEAYFHYRNLDVSTLKELCKRWQPAIAKGFTKHQRH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TAFADIIESIEELRYYREHFIRDVPQTPDAEALASSVAP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]