Click here to switch to the map view.

The map label for this gene is yjcD [H]

Identifier: 187927801

GI number: 187927801

Start: 740291

End: 741673

Strand: Reverse

Name: yjcD [H]

Synonym: Rpic_0705

Alternate gene names: 187927801

Gene position: 741673-740291 (Counterclockwise)

Preceding gene: 187927802

Following gene: 187927799

Centisome position: 18.81

GC content: 65.08

Gene sequence:

>1383_bases
ATGGCTGAACAGTCCATTCCGTCGTCGACGGAACTTGGCGCCGCTGGCATCGCCGATGCGCGTGCCATTGATCGCTATTT
CCAGATTTCTGCACGCGGCAGCACGCAAAAGCGCGAGGTCGTGGCTGGCATCACCACCTTCATGGCGATGGTCTACGCCG
TGTTTGTCGTGCCCGGCATGCTGGGCAAGGCCGGCTTTGATACCAGCGCTGTGTTCGTCGCGGTGTGTCTGACCACCGCC
TTCGGCTCGCTGCTCATGGGCTTGTGGGCCAAGCTGCCGATCGCCATCGGCTGCGCGATTTCGCTGACCGCGTTCATGGC
CTTTGGCCTGGTGCTCGGGCAAAAGCTCACGCCAGAGATCGCACTCGGCGCCGTGTTCCTGATGGGTGTGGTCTTCACCG
CCATCTCGGCCACGGGCGTGCGGTCCTGGATCCTGCGCAATCTGCCTTCGGGCGTGGCGCACGGCACGGGCATCGGCATC
GGGCTGTTCCTGCTGCTCATCGCGTCCAACGACGTGGGGCTGGTCGTCAAGAACGCCGGTGCGGGCCTGCCCGTTGCACT
GGGCCACGTCACTGCCTTCCCGGTGATGATGTCGGTGCTGGGACTGGCCGCCATCTTCGGCATGGAGCGTCGTCGCGTGC
CGGGCGGCATCCTGATCGTGATCATTGCCATCTCGGTCCTGGGACTGATCTTTGACCCGGCCGTGAAGTTCACCGGCGTG
TTCGCCGTGCCCTCGCTCGCCGCTGCAGGGCATGCCTCGCTGATCGGCACAATGGATATTCGCGGCGCACTTACGGCCGC
CGTGCTGCCCAGCGTGCTGGCACTGGTGATGACCGCCGTGTTCGATGCCACCGGCACGATCCGCGCGGTTGCCGGCCAGG
CCGGACTGCTCAACGACAAGGGCCATATCATCAACGGTGGCCGCGCCCTCACGGCCGATTCGATCAGCTCGATCTTCTCG
GCGTTCTTTGGCGGGGCTCCGGCGGCGGCTTACATCGAGTCGACGGTCGGCGTAGCAGCGGGCGGCAAGACTGGCCTGAC
GGCTGTGGTGGTCGGCGTGATGTTCCTGGCGGTGATGTTCTTCTCGCCGCTGGCGGGCCTGGTGCCGTCATACGCAACGG
CCCCGGCGCTGATGTATGTCGGCCTGCTGATGCTCTCCAGCGTGAGCAAGCTGCACATGGACGACATGGTTGACGCACTG
TCGGGCCTAGTCTGCGCCGTGTTCATCGTGCTGACCTGCAACATCGTCACCGGCATCATGCTGGGCTTTAGCACGCTGGT
GATCGGCCGCGTGGTGGCCGGCGAATGGCGCAAGCTGAACATCGGCACCGTGGCGATCGCGGCTGCGCTGGTAGCGTTCT
ACGTAGGCGGCTGGGCGATCTGA

Upstream 100 bases:

>100_bases
GTACGCAGGCACCCGTACCGATATCAAAACCAGAACAGGGCACCTTACGCGGACGACCAAGGTCGGCCGGCGCGGAGTCC
TGCCAGGAGACAAACCCACC

Downstream 100 bases:

>100_bases
TCGCACGGAACCGTCTGCCACAAAAGACAAACCGGCCAGACCCGAAAGGGCTGGCCGGTTTTTGTTTTGCCTAGGATTCT
GAGCCGGCTCCAACGCAAAA

Product: Xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MAEQSIPSSTELGAAGIADARAIDRYFQISARGSTQKREVVAGITTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTA
FGSLLMGLWAKLPIAIGCAISLTAFMAFGLVLGQKLTPEIALGAVFLMGVVFTAISATGVRSWILRNLPSGVAHGTGIGI
GLFLLLIASNDVGLVVKNAGAGLPVALGHVTAFPVMMSVLGLAAIFGMERRRVPGGILIVIIAISVLGLIFDPAVKFTGV
FAVPSLAAAGHASLIGTMDIRGALTAAVLPSVLALVMTAVFDATGTIRAVAGQAGLLNDKGHIINGGRALTADSISSIFS
AFFGGAPAAAYIESTVGVAAGGKTGLTAVVVGVMFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSKLHMDDMVDAL
SGLVCAVFIVLTCNIVTGIMLGFSTLVIGRVVAGEWRKLNIGTVAIAAALVAFYVGGWAI

Sequences:

>Translated_460_residues
MAEQSIPSSTELGAAGIADARAIDRYFQISARGSTQKREVVAGITTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTA
FGSLLMGLWAKLPIAIGCAISLTAFMAFGLVLGQKLTPEIALGAVFLMGVVFTAISATGVRSWILRNLPSGVAHGTGIGI
GLFLLLIASNDVGLVVKNAGAGLPVALGHVTAFPVMMSVLGLAAIFGMERRRVPGGILIVIIAISVLGLIFDPAVKFTGV
FAVPSLAAAGHASLIGTMDIRGALTAAVLPSVLALVMTAVFDATGTIRAVAGQAGLLNDKGHIINGGRALTADSISSIFS
AFFGGAPAAAYIESTVGVAAGGKTGLTAVVVGVMFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSKLHMDDMVDAL
SGLVCAVFIVLTCNIVTGIMLGFSTLVIGRVVAGEWRKLNIGTVAIAAALVAFYVGGWAI
>Mature_459_residues
AEQSIPSSTELGAAGIADARAIDRYFQISARGSTQKREVVAGITTFMAMVYAVFVVPGMLGKAGFDTSAVFVAVCLTTAF
GSLLMGLWAKLPIAIGCAISLTAFMAFGLVLGQKLTPEIALGAVFLMGVVFTAISATGVRSWILRNLPSGVAHGTGIGIG
LFLLLIASNDVGLVVKNAGAGLPVALGHVTAFPVMMSVLGLAAIFGMERRRVPGGILIVIIAISVLGLIFDPAVKFTGVF
AVPSLAAAGHASLIGTMDIRGALTAAVLPSVLALVMTAVFDATGTIRAVAGQAGLLNDKGHIINGGRALTADSISSIFSA
FFGGAPAAAYIESTVGVAAGGKTGLTAVVVGVMFLAVMFFSPLAGLVPSYATAPALMYVGLLMLSSVSKLHMDDMVDALS
GLVCAVFIVLTCNIVTGIMLGFSTLVIGRVVAGEWRKLNIGTVAIAAALVAFYVGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=439, Percent_Identity=71.9817767653759, Blast_Score=618, Evalue=1e-178,
Organism=Escherichia coli, GI48994909, Length=439, Percent_Identity=74.0318906605923, Blast_Score=617, Evalue=1e-178,
Organism=Escherichia coli, GI87082309, Length=430, Percent_Identity=39.0697674418605, Blast_Score=291, Evalue=9e-80,
Organism=Escherichia coli, GI1790150, Length=418, Percent_Identity=37.5598086124402, Blast_Score=259, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46718; Mature: 46587

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AEQSIPSSTELGAAGIADARAIDRYFQISARGSTQKREVVAGITTFMAMVYAVFVVPGM
CCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LGKAGFDTSAVFVAVCLTTAFGSLLMGLWAKLPIAIGCAISLTAFMAFGLVLGQKLTPEI
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
ALGAVFLMGVVFTAISATGVRSWILRNLPSGVAHGTGIGIGLFLLLIASNDVGLVVKNAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC
AGLPVALGHVTAFPVMMSVLGLAAIFGMERRRVPGGILIVIIAISVLGLIFDPAVKFTGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
FAVPSLAAAGHASLIGTMDIRGALTAAVLPSVLALVMTAVFDATGTIRAVAGQAGLLNDK
HHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCC
GHIINGGRALTADSISSIFSAFFGGAPAAAYIESTVGVAAGGKTGLTAVVVGVMFLAVMF
CCEECCCCEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
FSPLAGLVPSYATAPALMYVGLLMLSSVSKLHMDDMVDALSGLVCAVFIVLTCNIVTGIM
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGFSTLVIGRVVAGEWRKLNIGTVAIAAALVAFYVGGWAI
HHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]