BacMap

Definition	Ralstonia pickettii 12J chromosome chromosome 1, complete sequence.
Accession	NC_010682
Length	3,942,557

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The map label for this gene is ybbL [H]

Identifier: 187927795

GI number: 187927795

Start: 736442

End: 737116

Strand: Reverse

Name: ybbL [H]

Synonym: Rpic_0699

Alternate gene names: 187927795

Gene position: 737116-736442 (Counterclockwise)

Preceding gene: 187927797

Following gene: 187927794

Centisome position: 18.7

GC content: 67.85

Gene sequence:

>675_bases
ATGCTGGCCGCCACCCACCTCCAACGCCGCGATGCACGCACCGGTGTCACGCTGCTGCAATCTGCCACGCTTGCTGTGCA
GGCAGGCGACCGCATTGCGCTGACCGGGCCATCCGGCGCGGGCAAGAGCGTGCTGCTGCGCGCGCTGGCGCTGCTCGATC
CGCTCGATGATGGGCAAGTGACATGGCATGGCCAAGGGATCGGCCCGCGCGCGGTTCCGGCCTATCGCTGTCGCGTGGCG
TACGTGCGCCAGCGCCCAGCGCTGCTGCCCGGTACGGTGGAAGACAACCTGCACCTGCCCTATCAGCTGCACGTGCGGCG
CCACAGCACCGGCTTCGATCGAGACGCCGCTATCGCCTTGCTTGTGGGTGCCGAGCGCGACGCCAGCTTTCTCGACAAGA
ACGCCGCCGATCTTTCCGGCGGTGAAGCACAGATCGCGGCGCTGGTTCGCACACTACAGACACGGCCGACCGTCCTGCTG
CTCGACGAGCCTACGGCGGCCCTTGACCCCGCCTCTGCGCGTGCGGTCGAGGCGCTGTTGCAGCATTGGTTTGCGCAGGC
ACCCGAGCGGCATGCGTGGATGTGGGTGACACACGATTCGGCGCAAGCAGAGCGCATCGGCCGGCAGCATTGGAAGATGG
TTGCCGGGCAACTCGACACGGGGCCCGAGCGATGA

Upstream 100 bases:

>100_bases
TACTGACGATTACGGTGGAGGACCACTCCCCCCGCTCATATGCATAATGCATAAATGCAACGCATTGATGCCATACCGTA
CGCAACACACTCGCCCCACC

Downstream 100 bases:

>100_bases
ACGGCCAGGACCTCTCCCTTTCCGCCTGGCAGGTCGGCATTGCGGCTGCGCTGATCCTCGTGAACGGTGCGCTGTCCATC
GGCCTGGGGCTTGGGCTCGA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MLAATHLQRRDARTGVTLLQSATLAVQAGDRIALTGPSGAGKSVLLRALALLDPLDDGQVTWHGQGIGPRAVPAYRCRVA
YVRQRPALLPGTVEDNLHLPYQLHVRRHSTGFDRDAAIALLVGAERDASFLDKNAADLSGGEAQIAALVRTLQTRPTVLL
LDEPTAALDPASARAVEALLQHWFAQAPERHAWMWVTHDSAQAERIGRQHWKMVAGQLDTGPER

Sequences:

>Translated_224_residues
MLAATHLQRRDARTGVTLLQSATLAVQAGDRIALTGPSGAGKSVLLRALALLDPLDDGQVTWHGQGIGPRAVPAYRCRVA
YVRQRPALLPGTVEDNLHLPYQLHVRRHSTGFDRDAAIALLVGAERDASFLDKNAADLSGGEAQIAALVRTLQTRPTVLL
LDEPTAALDPASARAVEALLQHWFAQAPERHAWMWVTHDSAQAERIGRQHWKMVAGQLDTGPER
>Mature_224_residues
MLAATHLQRRDARTGVTLLQSATLAVQAGDRIALTGPSGAGKSVLLRALALLDPLDDGQVTWHGQGIGPRAVPAYRCRVA
YVRQRPALLPGTVEDNLHLPYQLHVRRHSTGFDRDAAIALLVGAERDASFLDKNAADLSGGEAQIAALVRTLQTRPTVLL
LDEPTAALDPASARAVEALLQHWFAQAPERHAWMWVTHDSAQAERIGRQHWKMVAGQLDTGPER

Specific function: Unknown

COG id: COG4619

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955963, Length=184, Percent_Identity=32.0652173913043, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI9961250, Length=176, Percent_Identity=31.25, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4505771, Length=176, Percent_Identity=31.25, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI9961252, Length=176, Percent_Identity=31.25, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI255708477, Length=177, Percent_Identity=28.2485875706215, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI9955968, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI9955966, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI45243524, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI42741659, Length=176, Percent_Identity=30.6818181818182, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI148612844, Length=193, Percent_Identity=31.6062176165803, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI190343023, Length=177, Percent_Identity=31.0734463276836, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI9665248, Length=193, Percent_Identity=32.6424870466321, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI46592964, Length=193, Percent_Identity=29.5336787564767, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI46592971, Length=193, Percent_Identity=29.5336787564767, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI46592978, Length=193, Percent_Identity=29.5336787564767, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI46592898, Length=193, Percent_Identity=29.5336787564767, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI46592956, Length=167, Percent_Identity=31.1377245508982, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI46592915, Length=167, Percent_Identity=31.1377245508982, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI171184400, Length=164, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1786698, Length=188, Percent_Identity=38.2978723404255, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1790162, Length=209, Percent_Identity=29.6650717703349, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=36.6666666666667, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788761, Length=218, Percent_Identity=32.1100917431193, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1786872, Length=189, Percent_Identity=32.8042328042328, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789672, Length=204, Percent_Identity=31.3725490196078, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI87081834, Length=197, Percent_Identity=30.4568527918782, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=31.7535545023697, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786398, Length=168, Percent_Identity=34.5238095238095, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787089, Length=206, Percent_Identity=32.0388349514563, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788225, Length=215, Percent_Identity=29.7674418604651, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787105, Length=200, Percent_Identity=32.5, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789032, Length=219, Percent_Identity=32.4200913242009, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787029, Length=196, Percent_Identity=31.6326530612245, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1786253, Length=209, Percent_Identity=30.1435406698565, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787143, Length=165, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081709, Length=189, Percent_Identity=30.1587301587302, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786654, Length=183, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87081791, Length=193, Percent_Identity=31.6062176165803, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=30.5418719211823, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790467, Length=204, Percent_Identity=30.8823529411765, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787370, Length=198, Percent_Identity=29.2929292929293, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787712, Length=190, Percent_Identity=31.0526315789474, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788450, Length=197, Percent_Identity=29.9492385786802, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI87081782, Length=195, Percent_Identity=35.3846153846154, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1788506, Length=208, Percent_Identity=31.25, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787500, Length=202, Percent_Identity=26.7326732673267, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI145693107, Length=210, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786563, Length=191, Percent_Identity=29.8429319371728, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082267, Length=207, Percent_Identity=29.951690821256, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790544, Length=176, Percent_Identity=32.3863636363636, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789962, Length=208, Percent_Identity=27.4038461538462, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787112, Length=189, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17533971, Length=201, Percent_Identity=29.8507462686567, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=187, Percent_Identity=30.4812834224599, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI212646699, Length=183, Percent_Identity=30.6010928961749, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=181, Percent_Identity=30.3867403314917, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI193211015, Length=181, Percent_Identity=30.3867403314917, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71996809, Length=181, Percent_Identity=30.3867403314917, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71984940, Length=192, Percent_Identity=28.6458333333333, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=197, Percent_Identity=29.9492385786802, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=160, Percent_Identity=33.125, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=172, Percent_Identity=30.8139534883721, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=195, Percent_Identity=29.7435897435897, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=178, Percent_Identity=32.5842696629214, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=183, Percent_Identity=28.9617486338798, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=185, Percent_Identity=31.3513513513514, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=176, Percent_Identity=27.8409090909091, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=185, Percent_Identity=32.4324324324324, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=175, Percent_Identity=30.2857142857143, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=170, Percent_Identity=30, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=175, Percent_Identity=29.1428571428571, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17511077, Length=168, Percent_Identity=27.9761904761905, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=177, Percent_Identity=28.8135593220339, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24659289, Length=183, Percent_Identity=34.9726775956284, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI85726357, Length=171, Percent_Identity=29.2397660818713, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI28574533, Length=161, Percent_Identity=33.5403726708075, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21357907, Length=165, Percent_Identity=31.5151515151515, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI281363262, Length=179, Percent_Identity=31.2849162011173, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24653245, Length=179, Percent_Identity=31.2849162011173, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24643394, Length=162, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17136662, Length=177, Percent_Identity=31.0734463276836, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221474134, Length=179, Percent_Identity=26.8156424581006, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24311; Mature: 24311

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAATHLQRRDARTGVTLLQSATLAVQAGDRIALTGPSGAGKSVLLRALALLDPLDDGQV
CCCCHHHHHHHHHHHHHHHHHCEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEE
TWHGQGIGPRAVPAYRCRVAYVRQRPALLPGTVEDNLHLPYQLHVRRHSTGFDRDAAIAL
EEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEE
LVGAERDASFLDKNAADLSGGEAQIAALVRTLQTRPTVLLLDEPTAALDPASARAVEALL
EEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH
QHWFAQAPERHAWMWVTHDSAQAERIGRQHWKMVAGQLDTGPER
HHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLAATHLQRRDARTGVTLLQSATLAVQAGDRIALTGPSGAGKSVLLRALALLDPLDDGQV
CCCCHHHHHHHHHHHHHHHHHCEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEE
TWHGQGIGPRAVPAYRCRVAYVRQRPALLPGTVEDNLHLPYQLHVRRHSTGFDRDAAIAL
EEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEE
LVGAERDASFLDKNAADLSGGEAQIAALVRTLQTRPTVLLLDEPTAALDPASARAVEALL
EEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH
QHWFAQAPERHAWMWVTHDSAQAERIGRQHWKMVAGQLDTGPER
HHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]