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The map label for this gene is tse [H]

Identifier: 187927636

GI number: 187927636

Start: 572030

End: 573859

Strand: Direct

Name: tse [H]

Synonym: Rpic_0536

Alternate gene names: 187927636

Gene position: 572030-573859 (Clockwise)

Preceding gene: 187927633

Following gene: 187927640

Centisome position: 14.51

GC content: 64.04

Gene sequence:

>1830_bases
ATGGGCGTCGTAGTAGGAAACCATACCGTGCTTGCATCCATCCGTACTCGCATTTTGCTGACCTGCGTTGCCATCGTGGT
CGGCGCATTGACCTTTGCCGGCGGTCTCAACTATCTCGTGACGCGCTCGTACAACGACGAGTCCATCCGCCAGAACCTGC
AGTCCGTCGCGCGGGGCCACATCGCTGGCATCGACGACTGGGTGGCGTCCAAGACGCAGATGATGGTGTCGCTGCAAGAC
GTGGCGGTGTCTGCCGATCCGATTCCGGTCTTCAAGGCCGTGCACAAGGCTGGCGGCTTCATTAACGTCTATGTTGGCTA
TCCCGACAAGTCGTACAAATTCTCGAACCCCGAAGGCATTCCGCCGACGTATGACCCGACCGCGCGCCCCTGGTACAAGC
AGGCGGTGGAGGCGGGCAAGCCTGTGGTGACGCCGCCGTACGTGAGCGCCAGCACCGGCCAGCTCGTGGTGACTTTCGCA
GTGCCCATTCTGGAAGGCGGCGCGCTCAAGGGCGTGATTGGCGGCGACGTGGCAATGGACAGCGTGATCGCCAACGTGAA
GGCCATCCATCCGACGCAGGCGAGCTTCGGTTTCCTCGTCAACGCTGCGGGCAAGATCGTTGCGCACCCGAATGACAAAC
TCACGCTCAAACCGGCAACTGAGCTGGCGGCAGGGTTGAACGAAGCCACACTGGCATCGCTGGCACAAGCCGAGAGGCCC
GTGGAAGTGACGGTGGATGGGGCGTCCAAGCTGCTCTACCGCCAGGGCGTGAAGGGCACCGACTGGGGCCTGGTGGTGGC
GCTGGACAAGTCTGACGCCACCGCGGGTATGCGCTCGCTGGTGATGACGTCGATTGGCGCGCTGGTGGGCGTGGCCATCG
TTGCAGCACTCATCGTCGGTGCAATGACGGCACGCGCGTTCCGCCGCCTGTCGATGATCCGTGATGCAATGGACGACATC
GGCTCGGGCAGCGGCGACCTCACCAAGCGTCTGCCGTCGGACGGCGAAGACGAAGTCGCGCAGATCGCCCGTTCGTTCAA
TGCGTTTGCCGACAAGCTCACGGCGGTGATGCAGCAGATCCGCCTGGGCAGCGATTCGGTGCGCTCGGCCGCGCAGGAAA
TTGCCGCCGGCAACGCAGACCTGTCGCAGCGCACGGAAGAGCAGGCCAGCTCGCTGGAAGAAACCGCGTCGAGCATGGAA
GAACTGACGAGTATCGTGAAGCAGAACGCCGACAACGCGCGTCAGGCCAGCCAGCTTGCCGTCACGGCGTCGGACGTGGC
CACGCGCGGCGGCAACGTGGTCGGCCAGGTTGTGCAGACCATGGGCGGCATCAACGAGAGCAGCAAGAAGATTGCCGACA
TCATCGGCGTGATCGAAAGCATCGCCTTCCAGACCAACATCCTGGCGCTGAACGCGGCGGTGGAAGCCGCGCGTGCCGGC
GAGCAGGGCCGCGGCTTTGCCGTGGTGGCCAGCGAAGTGCGCAGCCTGGCGCAGCGTTCGGCCGGTGCGGCCAAGGAAAT
CAAGGCGCTGATCAGCGACTCGGTGGATCGTGTGAGCAACGGCACGGCGCTGGTGGATCAGGCCGGCGTGACGATGGCCG
AGATCGTGGATGCAGTGAAGCGCGTGACCGACATCATGGGCGAGATTTCATCAGCGTCGGAAGAGCAGAGCAGCGGCATC
GAGCAGGTCAACCAGGCCGTCAACCAGATGGACCAGGTGACGCAGCAGAACGCCGCGCTGGTCGAGCAGGCGGCTGCCGC
TGCGGAATCGCTGGAGGAACAGGCCCACAACCTGAACGAGGCAGTGGGGCAGTTCCGCTTGTCGCACTAA

Upstream 100 bases:

>100_bases
GACAAATCAGACTTCAGATTCTCTTACAACGGCCGTTTCTTGTGCGACGGCAGGCCGACAGGGCCGCGTGCCGCATGCCT
TACATGGTGGAACCCCTGCC

Downstream 100 bases:

>100_bases
GTGCATTAACTGCACCATGTTGTCGCGTTACGGGGCCGGGGCGGCGTTTGTTGCCTCGGCCTTTGCCTTGTCCTGCGCTT
CGGCCAGCGCCACGTCGGCA

Product: Cache sensor-containing methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 609; Mature: 608

Protein sequence:

>609_residues
MGVVVGNHTVLASIRTRILLTCVAIVVGALTFAGGLNYLVTRSYNDESIRQNLQSVARGHIAGIDDWVASKTQMMVSLQD
VAVSADPIPVFKAVHKAGGFINVYVGYPDKSYKFSNPEGIPPTYDPTARPWYKQAVEAGKPVVTPPYVSASTGQLVVTFA
VPILEGGALKGVIGGDVAMDSVIANVKAIHPTQASFGFLVNAAGKIVAHPNDKLTLKPATELAAGLNEATLASLAQAERP
VEVTVDGASKLLYRQGVKGTDWGLVVALDKSDATAGMRSLVMTSIGALVGVAIVAALIVGAMTARAFRRLSMIRDAMDDI
GSGSGDLTKRLPSDGEDEVAQIARSFNAFADKLTAVMQQIRLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSME
ELTSIVKQNADNARQASQLAVTASDVATRGGNVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAG
EQGRGFAVVASEVRSLAQRSAGAAKEIKALISDSVDRVSNGTALVDQAGVTMAEIVDAVKRVTDIMGEISSASEEQSSGI
EQVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQAHNLNEAVGQFRLSH

Sequences:

>Translated_609_residues
MGVVVGNHTVLASIRTRILLTCVAIVVGALTFAGGLNYLVTRSYNDESIRQNLQSVARGHIAGIDDWVASKTQMMVSLQD
VAVSADPIPVFKAVHKAGGFINVYVGYPDKSYKFSNPEGIPPTYDPTARPWYKQAVEAGKPVVTPPYVSASTGQLVVTFA
VPILEGGALKGVIGGDVAMDSVIANVKAIHPTQASFGFLVNAAGKIVAHPNDKLTLKPATELAAGLNEATLASLAQAERP
VEVTVDGASKLLYRQGVKGTDWGLVVALDKSDATAGMRSLVMTSIGALVGVAIVAALIVGAMTARAFRRLSMIRDAMDDI
GSGSGDLTKRLPSDGEDEVAQIARSFNAFADKLTAVMQQIRLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSME
ELTSIVKQNADNARQASQLAVTASDVATRGGNVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAG
EQGRGFAVVASEVRSLAQRSAGAAKEIKALISDSVDRVSNGTALVDQAGVTMAEIVDAVKRVTDIMGEISSASEEQSSGI
EQVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQAHNLNEAVGQFRLSH
>Mature_608_residues
GVVVGNHTVLASIRTRILLTCVAIVVGALTFAGGLNYLVTRSYNDESIRQNLQSVARGHIAGIDDWVASKTQMMVSLQDV
AVSADPIPVFKAVHKAGGFINVYVGYPDKSYKFSNPEGIPPTYDPTARPWYKQAVEAGKPVVTPPYVSASTGQLVVTFAV
PILEGGALKGVIGGDVAMDSVIANVKAIHPTQASFGFLVNAAGKIVAHPNDKLTLKPATELAAGLNEATLASLAQAERPV
EVTVDGASKLLYRQGVKGTDWGLVVALDKSDATAGMRSLVMTSIGALVGVAIVAALIVGAMTARAFRRLSMIRDAMDDIG
SGSGDLTKRLPSDGEDEVAQIARSFNAFADKLTAVMQQIRLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSMEE
LTSIVKQNADNARQASQLAVTASDVATRGGNVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAGE
QGRGFAVVASEVRSLAQRSAGAAKEIKALISDSVDRVSNGTALVDQAGVTMAEIVDAVKRVTDIMGEISSASEEQSSGIE
QVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQAHNLNEAVGQFRLSH

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=284, Percent_Identity=65.8450704225352, Blast_Score=320, Evalue=1e-88,
Organism=Escherichia coli, GI2367378, Length=326, Percent_Identity=60.4294478527607, Blast_Score=312, Evalue=5e-86,
Organism=Escherichia coli, GI1787690, Length=329, Percent_Identity=55.6231003039514, Blast_Score=308, Evalue=8e-85,
Organism=Escherichia coli, GI1788194, Length=330, Percent_Identity=55.1515151515151, Blast_Score=295, Evalue=6e-81,
Organism=Escherichia coli, GI1789453, Length=237, Percent_Identity=44.7257383966245, Blast_Score=199, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 63537; Mature: 63405

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVVVGNHTVLASIRTRILLTCVAIVVGALTFAGGLNYLVTRSYNDESIRQNLQSVARGH
CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
IAGIDDWVASKTQMMVSLQDVAVSADPIPVFKAVHKAGGFINVYVGYPDKSYKFSNPEGI
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
PPTYDPTARPWYKQAVEAGKPVVTPPYVSASTGQLVVTFAVPILEGGALKGVIGGDVAMD
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHHHH
SVIANVKAIHPTQASFGFLVNAAGKIVAHPNDKLTLKPATELAAGLNEATLASLAQAERP
HHHHHHHHCCCCCHHHHHHHCCCCCEEECCCCCEEECCHHHHHHCCCHHHHHHHHHCCCC
VEVTVDGASKLLYRQGVKGTDWGLVVALDKSDATAGMRSLVMTSIGALVGVAIVAALIVG
EEEEECHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMTARAFRRLSMIRDAMDDIGSGSGDLTKRLPSDGEDEVAQIARSFNAFADKLTAVMQQI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASQLA
HCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHE
VTASDVATRGGNVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAG
EEHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EQGRGFAVVASEVRSLAQRSAGAAKEIKALISDSVDRVSNGTALVDQAGVTMAEIVDAVK
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHH
RVTDIMGEISSASEEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQAHNLNE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGQFRLSH
HHHHHCCCC
>Mature Secondary Structure 
GVVVGNHTVLASIRTRILLTCVAIVVGALTFAGGLNYLVTRSYNDESIRQNLQSVARGH
CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
IAGIDDWVASKTQMMVSLQDVAVSADPIPVFKAVHKAGGFINVYVGYPDKSYKFSNPEGI
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
PPTYDPTARPWYKQAVEAGKPVVTPPYVSASTGQLVVTFAVPILEGGALKGVIGGDVAMD
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCHHHHH
SVIANVKAIHPTQASFGFLVNAAGKIVAHPNDKLTLKPATELAAGLNEATLASLAQAERP
HHHHHHHHCCCCCHHHHHHHCCCCCEEECCCCCEEECCHHHHHHCCCHHHHHHHHHCCCC
VEVTVDGASKLLYRQGVKGTDWGLVVALDKSDATAGMRSLVMTSIGALVGVAIVAALIVG
EEEEECHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMTARAFRRLSMIRDAMDDIGSGSGDLTKRLPSDGEDEVAQIARSFNAFADKLTAVMQQI
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLGSDSVRSAAQEIAAGNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASQLA
HCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHE
VTASDVATRGGNVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAG
EEHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EQGRGFAVVASEVRSLAQRSAGAAKEIKALISDSVDRVSNGTALVDQAGVTMAEIVDAVK
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEHHHCCCHHHHHHHHHH
RVTDIMGEISSASEEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQAHNLNE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGQFRLSH
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]