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The map label for this gene is rarD [C]

Identifier: 187927590

GI number: 187927590

Start: 521784

End: 522680

Strand: Direct

Name: rarD [C]

Synonym: Rpic_0490

Alternate gene names: 187927590

Gene position: 521784-522680 (Clockwise)

Preceding gene: 187927589

Following gene: 187927591

Centisome position: 13.23

GC content: 67.0

Gene sequence:

>897_bases
ATGTCGGCTTCCAATCGCAACGGCGTGATCTTCGCGTTTCTGGCCTACACGATGTGGGGCTTGTTTCCGCTGTACTTCAA
GCTGCTCAAGGCGGTGTCGCCGGTCGAGATTCTCTCGCACCGGGTGATCTGGTCATTGGCGGTGATGGTGGTGATCCTGC
TCGCGAAGCGGCACGGGGCGTGGTTGTGGGCGCTGCGCACGCAACCGCGTGTGGTGGGGCGCTACGCGGTCAGCACCAGT
CTGTTGGCTGCGAACTGGCTGACCTACATCTGGGCCGTCAACCACGACCATGTGCTCGAAGCCAGCCTGGGCTATTTCAT
CAACCCGCTGGTGGTGGTGATGCTCGCCGCGCTGGTGCTGGGCGAGCGGCTGCGGCCGGTGCAGTGGGTGTCGGTGGCGC
TGGCGGCAGCCGGCGTGTCGTGGCTGACCTGGCAGGCCGGCACGCTGCCGTGGATTGCCCTGGCGCTGGCGTTCTCGTTC
GGGTTCTACGGCCTGCTGCGCAAGACCTCGCCGCTGGGCGCGCTGGAAGGGCTGACGCTGGAGACGTTGCTGCTGTTCCC
GCTGGCGCTGGCCTATCTCGGCTGGCTGGCTTCGCAGCATCAGAACGCCTTCCTGGCCGCGTCGCCGGGCACGCAGTGGC
TGCTGGCGCTGGCCGGGCCACTGACGGCGCTGCCGCTGCTGCTGTTTGGCGCCGGCGCGCGGCGGATTCCGCTGTCGCTG
CTGGGTTTGCTGCAATACGTGAGCCCAACGCTGCAACTGCTGCTGGGCGTATGGCTCTACAACGAGCCGTTTGCGGGGCC
CAAGGTGGCGGGCTATGTGCTGATCTGGGCGGGTCTTGCCGTGTATTCAGCCGAAAGCTGGATGCAACTGCGCCGCCGCA
CGCCGCTGCCGGCGTAG

Upstream 100 bases:

>100_bases
GAATTGCCGCCACCGCGTTCTACGTTGCCACGCGGCGCATGCTCGGCATGATCTTCGTCGGCATGGGCGTTTTTACCGTG
CTGCGTCTCTGGGGATGAAC

Downstream 100 bases:

>100_bases
TCCCCGCCAATCGGCCTCGGCAAGACGGCCGAGGCCGGAGGACTCCGCCGAGAAACGCACGTTTTGACCAGGCGCATCGG
GTAAAATCGTCGTTTTCCGC

Product: RarD protein, DMT superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSASNRNGVIFAFLAYTMWGLFPLYFKLLKAVSPVEILSHRVIWSLAVMVVILLAKRHGAWLWALRTQPRVVGRYAVSTS
LLAANWLTYIWAVNHDHVLEASLGYFINPLVVVMLAALVLGERLRPVQWVSVALAAAGVSWLTWQAGTLPWIALALAFSF
GFYGLLRKTSPLGALEGLTLETLLLFPLALAYLGWLASQHQNAFLAASPGTQWLLALAGPLTALPLLLFGAGARRIPLSL
LGLLQYVSPTLQLLLGVWLYNEPFAGPKVAGYVLIWAGLAVYSAESWMQLRRRTPLPA

Sequences:

>Translated_298_residues
MSASNRNGVIFAFLAYTMWGLFPLYFKLLKAVSPVEILSHRVIWSLAVMVVILLAKRHGAWLWALRTQPRVVGRYAVSTS
LLAANWLTYIWAVNHDHVLEASLGYFINPLVVVMLAALVLGERLRPVQWVSVALAAAGVSWLTWQAGTLPWIALALAFSF
GFYGLLRKTSPLGALEGLTLETLLLFPLALAYLGWLASQHQNAFLAASPGTQWLLALAGPLTALPLLLFGAGARRIPLSL
LGLLQYVSPTLQLLLGVWLYNEPFAGPKVAGYVLIWAGLAVYSAESWMQLRRRTPLPA
>Mature_297_residues
SASNRNGVIFAFLAYTMWGLFPLYFKLLKAVSPVEILSHRVIWSLAVMVVILLAKRHGAWLWALRTQPRVVGRYAVSTSL
LAANWLTYIWAVNHDHVLEASLGYFINPLVVVMLAALVLGERLRPVQWVSVALAAAGVSWLTWQAGTLPWIALALAFSFG
FYGLLRKTSPLGALEGLTLETLLLFPLALAYLGWLASQHQNAFLAASPGTQWLLALAGPLTALPLLLFGAGARRIPLSLL
GLLQYVSPTLQLLLGVWLYNEPFAGPKVAGYVLIWAGLAVYSAESWMQLRRRTPLPA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=294, Percent_Identity=44.2176870748299, Blast_Score=230, Evalue=7e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32727; Mature: 32596

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASNRNGVIFAFLAYTMWGLFPLYFKLLKAVSPVEILSHRVIWSLAVMVVILLAKRHGA
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
WLWALRTQPRVVGRYAVSTSLLAANWLTYIWAVNHDHVLEASLGYFINPLVVVMLAALVL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GERLRPVQWVSVALAAAGVSWLTWQAGTLPWIALALAFSFGFYGLLRKTSPLGALEGLTL
HHHCCHHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHH
ETLLLFPLALAYLGWLASQHQNAFLAASPGTQWLLALAGPLTALPLLLFGAGARRIPLSL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LGLLQYVSPTLQLLLGVWLYNEPFAGPKVAGYVLIWAGLAVYSAESWMQLRRRTPLPA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SASNRNGVIFAFLAYTMWGLFPLYFKLLKAVSPVEILSHRVIWSLAVMVVILLAKRHGA
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
WLWALRTQPRVVGRYAVSTSLLAANWLTYIWAVNHDHVLEASLGYFINPLVVVMLAALVL
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
GERLRPVQWVSVALAAAGVSWLTWQAGTLPWIALALAFSFGFYGLLRKTSPLGALEGLTL
HHHCCHHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHH
ETLLLFPLALAYLGWLASQHQNAFLAASPGTQWLLALAGPLTALPLLLFGAGARRIPLSL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LGLLQYVSPTLQLLLGVWLYNEPFAGPKVAGYVLIWAGLAVYSAESWMQLRRRTPLPA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]