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The map label for this gene is csrA [H]

Identifier: 187918058

GI number: 187918058

Start: 185748

End: 185984

Strand: Direct

Name: csrA [H]

Synonym: BH0184

Alternate gene names: 187918058

Gene position: 185748-185984 (Clockwise)

Preceding gene: 187918057

Following gene: 187918065

Centisome position: 20.14

GC content: 19.83

Gene sequence:

>237_bases
ATGCTAGTATTATCAAGAAAAGCAAACGAAAGCATCAAAATAGACTCTAACATTGAAATTTCAATATTAGAAATAAAAAA
AGACAGTGTTAAAATAGCTATAAAAGCTCCTGAAAATATTAAAATACTTAGATCTGAAATTTATGATATCATCAAAGAAG
AAAATAAAAAATCAATCTTACAAGACAAAAATAACATACATAAAATTAAAAATTTATTTGATTATTTTAATAAATAA

Upstream 100 bases:

>100_bases
AAGCTCCAATCATATTAAACAAAAAGAAACTAATTGGGAAACAAGCCATATCTACAAATGAAGAGCATTACCTTAGATAT
AGGGTCTTTAAGGAATAAAT

Downstream 100 bases:

>100_bases
GAATTAATCTCGGCATCACTAAGTCTTACATAAAAGGGTCCTGATAAAATATCATCGCCCTGCCTGCTTTTTAAATACTT
AAACTTACCAAGCTCTGTTA

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MLVLSRKANESIKIDSNIEISILEIKKDSVKIAIKAPENIKILRSEIYDIIKEENKKSILQDKNNIHKIKNLFDYFNK

Sequences:

>Translated_78_residues
MLVLSRKANESIKIDSNIEISILEIKKDSVKIAIKAPENIKILRSEIYDIIKEENKKSILQDKNNIHKIKNLFDYFNK
>Mature_78_residues
MLVLSRKANESIKIDSNIEISILEIKKDSVKIAIKAPENIKILRSEIYDIIKEENKKSILQDKNNIHKIKNLFDYFNK

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 9142; Mature: 9142

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLSRKANESIKIDSNIEISILEIKKDSVKIAIKAPENIKILRSEIYDIIKEENKKSIL
CEEECCCCCCCEEECCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHH
QDKNNIHKIKNLFDYFNK
HCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLVLSRKANESIKIDSNIEISILEIKKDSVKIAIKAPENIKILRSEIYDIIKEENKKSIL
CEEECCCCCCCEEECCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHH
QDKNNIHKIKNLFDYFNK
HCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA