| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187736650
Identifier: 187736650
GI number: 187736650
Start: 2651945
End: 2652319
Strand: Reverse
Name: 187736650
Synonym: Amuc_2174
Alternate gene names: NA
Gene position: 2652319-2651945 (Counterclockwise)
Preceding gene: 187736652
Following gene: 187736647
Centisome position: 99.56
GC content: 53.87
Gene sequence:
>375_bases ATGAGAGAGTCCGTCATGGCCTCTTCCCCGGATGTAGTAGAATATATTTGTTTCCAGCTCCGGCATGCCGGGGATATTTC CTTCAGAAAAATGTTTGGGGACTACGGATTGTACTGCGGCCGGACATTCTTCGGTTTGGTGTGTGACAACCAGTTGTATG TCAAGATAACGGAGCCGGGTTTGAAGATGTTTCCGCAACAGGAGCAGGGCTGCCCCTATCCCGGCGCCAGGCCGCATTTC CTGGTGACGGAGCTGGACGATGACCGGATCCTTTCCTCCCTTGTCAGGGAGACATGCTCCGTTCTGGCTGTTCCGTCTGT TCTGGAGGGGAAGAAGAAAAAGGCGTCCGGTGAAAAAAGAAGCAGGCGCCCTTAG
Upstream 100 bases:
>100_bases GGGCATGCTGCGCGCCTTTTCTCGTCAATAACGGGGATGCCTCATTCCTGCCGGAATCCTTCCCGGCCGTCATTTGCTTC TTGCAGCGGACGGGGGAGGC
Downstream 100 bases:
>100_bases ACGCCTGCCGGCAGGAAATGGCTGCTGGAGAGGAAGGTTATTTTCCGGGAGTTTCCGGAGCGGCCAGGGAGGAGAGGTTC TTCTTCAGGTTGGCGGCGGC
Product: TfoX domain protein
Products: NA
Alternate protein names: TfoX Domain Protein; TfoX-Like Protein; TfoX N- Domain Family Protein; Competence-Specific Protein; TfoX N-Terminal Domain-Containing Protein; Regulator Of Competence-Specific Genes; Regulator Protein
Number of amino acids: Translated: 124; Mature: 124
Protein sequence:
>124_residues MRESVMASSPDVVEYICFQLRHAGDISFRKMFGDYGLYCGRTFFGLVCDNQLYVKITEPGLKMFPQQEQGCPYPGARPHF LVTELDDDRILSSLVRETCSVLAVPSVLEGKKKKASGEKRSRRP
Sequences:
>Translated_124_residues MRESVMASSPDVVEYICFQLRHAGDISFRKMFGDYGLYCGRTFFGLVCDNQLYVKITEPGLKMFPQQEQGCPYPGARPHF LVTELDDDRILSSLVRETCSVLAVPSVLEGKKKKASGEKRSRRP >Mature_124_residues MRESVMASSPDVVEYICFQLRHAGDISFRKMFGDYGLYCGRTFFGLVCDNQLYVKITEPGLKMFPQQEQGCPYPGARPHF LVTELDDDRILSSLVRETCSVLAVPSVLEGKKKKASGEKRSRRP
Specific function: Unknown
COG id: COG3070
COG function: function code K; Regulator of competence-specific genes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14026; Mature: 14026
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 4.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRESVMASSPDVVEYICFQLRHAGDISFRKMFGDYGLYCGRTFFGLVCDNQLYVKITEPG CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHEEECCEEEEEECCCC LKMFPQQEQGCPYPGARPHFLVTELDDDRILSSLVRETCSVLAVPSVLEGKKKKASGEKR CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCHHHCCCCHHCCCCCC SRRP CCCC >Mature Secondary Structure MRESVMASSPDVVEYICFQLRHAGDISFRKMFGDYGLYCGRTFFGLVCDNQLYVKITEPG CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHEEECCEEEEEECCCC LKMFPQQEQGCPYPGARPHFLVTELDDDRILSSLVRETCSVLAVPSVLEGKKKKASGEKR CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCHHHCCCCHHCCCCCC SRRP CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA