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The map label for this gene is hoxK [H]

Identifier: 187736606

GI number: 187736606

Start: 2594717

End: 2595913

Strand: Direct

Name: hoxK [H]

Synonym: Amuc_2128

Alternate gene names: 187736606

Gene position: 2594717-2595913 (Clockwise)

Preceding gene: 187736605

Following gene: 187736607

Centisome position: 97.4

GC content: 61.24

Gene sequence:

>1197_bases
ATGCAGGAGGCGGAGCAGGCCTCCCTGAATCATGAGATTTTAAATACATGGCGTCCCGGGGAAACTCTGGGGGAACACAT
GGAGCGCCGCGGCGTCAGCCGGCGCGAATTCAACAAGTGGTGTCTGAAAATGATCTCCCTGATGGGCGTTGCCACTGTAA
CGGGCGGCATTTCCAACGCCCAGGAGATTGCGGACAAGATGGCCGCATTGAAACGTCCCGTAGTCATCTGGCTCCAGCTT
CAGGAATGCACCGGATGCCTGGAAAGCACTATCCGCAGCTATAACGAGGAAATCGGGGACATGGTGCTTTCCGCCGTCTC
CATGCCTTACGTGGAACTGCTGATGGCCCCTTCAGGAGAGGCCGCCAATCAGGCTCTGGAAGACGCGATCAGGGAGCCCC
ACATCCTCGTCATCAACGGTTCCGTTCCGGTCAATGACGGCGGGGTGTACTGCACCGTGGCCGGAGATACCGTGGAGAAC
ATGCTGCGCCATTGCGCGGAAAACGCCTCTCATATCCTGGCCGTGGGTTCGTGCGCGTACTTCGGCTCCATCCAGGCCGC
CCGTCCCAACCCCACCGGGGCCGTGGGCATCCGGGACATCCTGACGGACCGCACGGTCATCAACGTGCCCGGCTGCCCGC
CCATCGGGGACGTGATTACGGCCGTCATCATGTACATCCTTACATTTGACCGCGCCCCGGAATGCGACCTGGAGTCGCGC
CCGCTGATGGCATACGGCACCCGCATCCACAATAATTGCCCGCGCCGCGCCCATTTCGACGCCGGACAGTTCGTCAACGT
GTTTGACGACGAGAACGCGCGGGAATGCTTCTGCCTGTACAAGGTGGGCTGCAAGGGCCCGGATACGTTCTCTCCCTGCC
CCATCGTCAAATGGAATGGCGGCGTCAGCTTCCCCATCCAGTCCGGCCACCCGTGCATCGGCTGTACGGAGCTGTACTTC
TTTGACCGCATGACTCCGTTTTACAAGACGCTGCCGAACGTGAACGGCTTCGGCGTGGAAGCCTCCGCCAACATCATCGG
GGCTGTGGGCGTAGCCGGCGCCGGAGCGGCAATCGCCGCCCATGCCGTGGGCTCCGCCATTCATTACAGGAAGCAGCACA
TGAAGGAGGAAGCAAACGTCTCCCTGCCCGCCTTCGGGGACGCTCCCGGCTCGCCCGACAAGGAAATTGAAGAATAG

Upstream 100 bases:

>100_bases
CGGAAAACTGGAAAATATTGATCGCATTTCCCGGAAATCCTGTCTAAATGGAAATGTTCTTATTTGGACCACGCACATGA
AGCGCATTCAGCAACCTTCC

Downstream 100 bases:

>100_bases
CCAGAAGCCCTCACCACCAGATTACCATGAGCAATTACACATCAGCGGACGTTCCGGAATCCAGCCGGGTGGTCATTGAC
CCGGTAACGCGCATCGAAGG

Product: hydrogenase (NiFe) small subunit HydA

Products: NA

Alternate protein names: Hydrogenlyase; Membrane-bound hydrogenase small subunit [H]

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MQEAEQASLNHEILNTWRPGETLGEHMERRGVSRREFNKWCLKMISLMGVATVTGGISNAQEIADKMAALKRPVVIWLQL
QECTGCLESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGEAANQALEDAIREPHILVINGSVPVNDGGVYCTVAGDTVEN
MLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGIRDILTDRTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESR
PLMAYGTRIHNNCPRRAHFDAGQFVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKWNGGVSFPIQSGHPCIGCTELYF
FDRMTPFYKTLPNVNGFGVEASANIIGAVGVAGAGAAIAAHAVGSAIHYRKQHMKEEANVSLPAFGDAPGSPDKEIEE

Sequences:

>Translated_398_residues
MQEAEQASLNHEILNTWRPGETLGEHMERRGVSRREFNKWCLKMISLMGVATVTGGISNAQEIADKMAALKRPVVIWLQL
QECTGCLESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGEAANQALEDAIREPHILVINGSVPVNDGGVYCTVAGDTVEN
MLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGIRDILTDRTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESR
PLMAYGTRIHNNCPRRAHFDAGQFVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKWNGGVSFPIQSGHPCIGCTELYF
FDRMTPFYKTLPNVNGFGVEASANIIGAVGVAGAGAAIAAHAVGSAIHYRKQHMKEEANVSLPAFGDAPGSPDKEIEE
>Mature_398_residues
MQEAEQASLNHEILNTWRPGETLGEHMERRGVSRREFNKWCLKMISLMGVATVTGGISNAQEIADKMAALKRPVVIWLQL
QECTGCLESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGEAANQALEDAIREPHILVINGSVPVNDGGVYCTVAGDTVEN
MLRHCAENASHILAVGSCAYFGSIQAARPNPTGAVGIRDILTDRTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESR
PLMAYGTRIHNNCPRRAHFDAGQFVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKWNGGVSFPIQSGHPCIGCTELYF
FDRMTPFYKTLPNVNGFGVEASANIIGAVGVAGAGAAIAAHAVGSAIHYRKQHMKEEANVSLPAFGDAPGSPDKEIEE

Specific function: This enzyme recycles the H(2) produced by nitrogenase to increase the production of ATP and to protect nitrogenase against inhibition or damage by O(2) under carbon- or phosphate-limited conditions [H]

COG id: COG1740

COG function: function code C; Ni,Fe-hydrogenase I small subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

Organism=Escherichia coli, GI1787206, Length=378, Percent_Identity=42.5925925925926, Blast_Score=292, Evalue=3e-80,
Organism=Escherichia coli, GI1789371, Length=296, Percent_Identity=40.8783783783784, Blast_Score=238, Evalue=6e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137
- InterPro:   IPR001821
- InterPro:   IPR006311 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.99.6 [H]

Molecular weight: Translated: 43034; Mature: 43034

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEAEQASLNHEILNTWRPGETLGEHMERRGVSRREFNKWCLKMISLMGVATVTGGISNA
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
QEIADKMAALKRPVVIWLQLQECTGCLESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGE
HHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCH
AANQALEDAIREPHILVINGSVPVNDGGVYCTVAGDTVENMLRHCAENASHILAVGSCAY
HHHHHHHHHHCCCEEEEEECCEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECHHH
FGSIQAARPNPTGAVGIRDILTDRTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESR
HCCEECCCCCCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PLMAYGTRIHNNCPRRAHFDAGQFVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKWNG
CHHHCCCHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEECC
GVSFPIQSGHPCIGCTELYFFDRMTPFYKTLPNVNGFGVEASANIIGAVGVAGAGAAIAA
CEECCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCEECCCCEEEECCCCCCCHHHHH
HAVGSAIHYRKQHMKEEANVSLPAFGDAPGSPDKEIEE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQEAEQASLNHEILNTWRPGETLGEHMERRGVSRREFNKWCLKMISLMGVATVTGGISNA
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
QEIADKMAALKRPVVIWLQLQECTGCLESTIRSYNEEIGDMVLSAVSMPYVELLMAPSGE
HHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCH
AANQALEDAIREPHILVINGSVPVNDGGVYCTVAGDTVENMLRHCAENASHILAVGSCAY
HHHHHHHHHHCCCEEEEEECCEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECHHH
FGSIQAARPNPTGAVGIRDILTDRTVINVPGCPPIGDVITAVIMYILTFDRAPECDLESR
HCCEECCCCCCCCCHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PLMAYGTRIHNNCPRRAHFDAGQFVNVFDDENARECFCLYKVGCKGPDTFSPCPIVKWNG
CHHHCCCHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEECC
GVSFPIQSGHPCIGCTELYFFDRMTPFYKTLPNVNGFGVEASANIIGAVGVAGAGAAIAA
CEECCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCEECCCCEEEECCCCCCCHHHHH
HAVGSAIHYRKQHMKEEANVSLPAFGDAPGSPDKEIEE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1383192; 12948488; 2493816 [H]