| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is maeB [H]
Identifier: 187736584
GI number: 187736584
Start: 2562143
End: 2563453
Strand: Reverse
Name: maeB [H]
Synonym: Amuc_2106
Alternate gene names: 187736584
Gene position: 2563453-2562143 (Counterclockwise)
Preceding gene: 187736587
Following gene: 187736554
Centisome position: 96.22
GC content: 58.28
Gene sequence:
>1311_bases ATGAGTTCCGATATTAGATTAGATGCCTTGCAGTACCATTCCCAGCCCCGCCCCGGCAAGGTGGAAACGCTGCCCTGCAA GCCCTGCTTTTCACAACGGGATCTGACTCTTGCCTATTCCCCGGGCGTGGCCGAGCCCTGCCTCCGCATTAAAGAGGATC CTTCTCAAAGCGCCCTGTACACTGGTCGCTCCAATCTGGTGGGCGTAATCACCAACGGCACCGCCGTTCTGGGACTGGGC AATATCGGTCCGGATGCCTCCAAGCCGGTGATGGAGGGCAAGGGCGTTCTGTTCAAGGTGTTCGCGGATATTGACGTTTT TGACATTGAGCTGAACGTGAAGGAACCGGAAAAGCTGATTGAGACGATCAAGACCATGGAACCCACTTTCGGCGCCATCA ATCTGGAGGACATCAAGGCTCCGGAATGCTTCATGGTGGAAGAACGCCTGCGGGAGGAGATGAATATTCCCGTGTTTCAT GACGACCAGCATGGCACGGCCGTGATTTCCGGCGCCGCCCTGCTGAACGCCGCGGAGTTGACGGGCCGCAAGCTGGAGGA TATGAAGGTTGTCGTCGTGGGGGCCGGCGCTGCCGGCATTTCCTGCGCCAAGTTCTACATGACGTTAGGGGTGCGTCGCG AACATATCTACATGTTTGATTCCAAGGGGCTGATTCATACCGGACGCATTGATCTTCATGCCACGAAAGCGCAGTTCTCC CAGTCGGAAGACTGCTCCCTGGAGGAGGCCCTTACCGGAGCGGACGTGTTCCTGGGGCTGTCCACCAAGGGACTGCTCAC GCAGGACATGGTGAAGCTCATGGCTCCTTCCCCCATCATTTTCGCCTGTGCGAATCCGGACCCGGAAATTACGTATCAGG ATGCTAAAAAAGCGCGGCCTGACTGCATTATGGGGTCCGGCCGTTCCGACTGGCCCAACCAGGTGAACAATGTTTCCTGT TTCCCCTTTATTTTCCGTGCCGCCCTGGATGTGCGCGCTTCCGTCATCAATGAACAGATGAAGATTGCCGCCGCCCGCGC CCTGGCCGATCTGGCGAAGGAGCCCGTCCCCCAGGAAGTGATTGACCTTTACGGGGGAGCCCCGCTCAGCTTCGGCATCG ACTACGTGATTCCCAAGCCCATTGATCCCCGCATTATTGAATGGGAGTGCCCGGCGGTAGCCCAGGCGGCCATGATTTCC GGGGTGGCCCAGTCCCCCATCCGGGATATGGAAGCCTACACGCTGGAATTGCGCAAGCGCATTGCCGCGGCTCGTGAACG CGTCTCCGGCGTGGTGCGCAGCTATCTTTAA
Upstream 100 bases:
>100_bases TTTTCCGGAGCGTGTGACGCAATTAATTGATTATTTACTTGAATGCATGTCTGTTCTGTGGTGCAAGCAAGGCTCGATTT TCTGTTTTTTCATTACAATC
Downstream 100 bases:
>100_bases CTGGTTTCCGGCGGAAGGCCGGCAACCTCATGCCGTGCAGGAACGTATTTAATGGCAAGGGGGGGAGACTGCGTCAAATG CCTCTGGAGGCGGAAAAAAG
Product: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MSSDIRLDALQYHSQPRPGKVETLPCKPCFSQRDLTLAYSPGVAEPCLRIKEDPSQSALYTGRSNLVGVITNGTAVLGLG NIGPDASKPVMEGKGVLFKVFADIDVFDIELNVKEPEKLIETIKTMEPTFGAINLEDIKAPECFMVEERLREEMNIPVFH DDQHGTAVISGAALLNAAELTGRKLEDMKVVVVGAGAAGISCAKFYMTLGVRREHIYMFDSKGLIHTGRIDLHATKAQFS QSEDCSLEEALTGADVFLGLSTKGLLTQDMVKLMAPSPIIFACANPDPEITYQDAKKARPDCIMGSGRSDWPNQVNNVSC FPFIFRAALDVRASVINEQMKIAAARALADLAKEPVPQEVIDLYGGAPLSFGIDYVIPKPIDPRIIEWECPAVAQAAMIS GVAQSPIRDMEAYTLELRKRIAAARERVSGVVRSYL
Sequences:
>Translated_436_residues MSSDIRLDALQYHSQPRPGKVETLPCKPCFSQRDLTLAYSPGVAEPCLRIKEDPSQSALYTGRSNLVGVITNGTAVLGLG NIGPDASKPVMEGKGVLFKVFADIDVFDIELNVKEPEKLIETIKTMEPTFGAINLEDIKAPECFMVEERLREEMNIPVFH DDQHGTAVISGAALLNAAELTGRKLEDMKVVVVGAGAAGISCAKFYMTLGVRREHIYMFDSKGLIHTGRIDLHATKAQFS QSEDCSLEEALTGADVFLGLSTKGLLTQDMVKLMAPSPIIFACANPDPEITYQDAKKARPDCIMGSGRSDWPNQVNNVSC FPFIFRAALDVRASVINEQMKIAAARALADLAKEPVPQEVIDLYGGAPLSFGIDYVIPKPIDPRIIEWECPAVAQAAMIS GVAQSPIRDMEAYTLELRKRIAAARERVSGVVRSYL >Mature_435_residues SSDIRLDALQYHSQPRPGKVETLPCKPCFSQRDLTLAYSPGVAEPCLRIKEDPSQSALYTGRSNLVGVITNGTAVLGLGN IGPDASKPVMEGKGVLFKVFADIDVFDIELNVKEPEKLIETIKTMEPTFGAINLEDIKAPECFMVEERLREEMNIPVFHD DQHGTAVISGAALLNAAELTGRKLEDMKVVVVGAGAAGISCAKFYMTLGVRREHIYMFDSKGLIHTGRIDLHATKAQFSQ SEDCSLEEALTGADVFLGLSTKGLLTQDMVKLMAPSPIIFACANPDPEITYQDAKKARPDCIMGSGRSDWPNQVNNVSCF PFIFRAALDVRASVINEQMKIAAARALADLAKEPVPQEVIDLYGGAPLSFGIDYVIPKPIDPRIIEWECPAVAQAAMISG VAQSPIRDMEAYTLELRKRIAAARERVSGVVRSYL
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI4505145, Length=353, Percent_Identity=25.7790368271955, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1788806, Length=420, Percent_Identity=56.6666666666667, Blast_Score=478, Evalue=1e-136, Organism=Escherichia coli, GI87081919, Length=399, Percent_Identity=23.8095238095238, Blast_Score=69, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17537199, Length=347, Percent_Identity=29.1066282420749, Blast_Score=73, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6322823, Length=268, Percent_Identity=30.2238805970149, Blast_Score=85, Evalue=2e-17, Organism=Drosophila melanogaster, GI78707242, Length=341, Percent_Identity=26.6862170087977, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI78707238, Length=341, Percent_Identity=26.6862170087977, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI78707240, Length=341, Percent_Identity=26.6862170087977, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24646388, Length=348, Percent_Identity=27.2988505747126, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI24646386, Length=348, Percent_Identity=27.2988505747126, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI281362674, Length=362, Percent_Identity=25.6906077348066, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI281362672, Length=362, Percent_Identity=25.6906077348066, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI21356279, Length=362, Percent_Identity=25.6906077348066, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 47517; Mature: 47386
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSDIRLDALQYHSQPRPGKVETLPCKPCFSQRDLTLAYSPGVAEPCLRIKEDPSQSALY CCCCCEEHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCEEE TGRSNLVGVITNGTAVLGLGNIGPDASKPVMEGKGVLFKVFADIDVFDIELNVKEPEKLI ECCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHH ETIKTMEPTFGAINLEDIKAPECFMVEERLREEMNIPVFHDDQHGTAVISGAALLNAAEL HHHHHCCCCCCEEEHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHHH TGRKLEDMKVVVVGAGAAGISCAKFYMTLGVRREHIYMFDSKGLIHTGRIDLHATKAQFS CCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCEEEECEEEEEECHHHCC QSEDCSLEEALTGADVFLGLSTKGLLTQDMVKLMAPSPIIFACANPDPEITYQDAKKARP CCCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEECCHHCCCC DCIMGSGRSDWPNQVNNVSCFPFIFRAALDVRASVINEQMKIAAARALADLAKEPVPQEV CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IDLYGGAPLSFGIDYVIPKPIDPRIIEWECPAVAQAAMISGVAQSPIRDMEAYTLELRKR HHHHCCCCHHCCCEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH IAAARERVSGVVRSYL HHHHHHHHHHHHHHCC >Mature Secondary Structure SSDIRLDALQYHSQPRPGKVETLPCKPCFSQRDLTLAYSPGVAEPCLRIKEDPSQSALY CCCCEEHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCEEE TGRSNLVGVITNGTAVLGLGNIGPDASKPVMEGKGVLFKVFADIDVFDIELNVKEPEKLI ECCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHH ETIKTMEPTFGAINLEDIKAPECFMVEERLREEMNIPVFHDDQHGTAVISGAALLNAAEL HHHHHCCCCCCEEEHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHHH TGRKLEDMKVVVVGAGAAGISCAKFYMTLGVRREHIYMFDSKGLIHTGRIDLHATKAQFS CCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEECCCEEEECEEEEEECHHHCC QSEDCSLEEALTGADVFLGLSTKGLLTQDMVKLMAPSPIIFACANPDPEITYQDAKKARP CCCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEECCHHCCCC DCIMGSGRSDWPNQVNNVSCFPFIFRAALDVRASVINEQMKIAAARALADLAKEPVPQEV CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IDLYGGAPLSFGIDYVIPKPIDPRIIEWECPAVAQAAMISGVAQSPIRDMEAYTLELRKR HHHHCCCCHHCCCEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH IAAARERVSGVVRSYL HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]