| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is metG [H]
Identifier: 187736581
GI number: 187736581
Start: 2556856
End: 2558508
Strand: Direct
Name: metG [H]
Synonym: Amuc_2103
Alternate gene names: 187736581
Gene position: 2556856-2558508 (Clockwise)
Preceding gene: 187736580
Following gene: 187736582
Centisome position: 95.97
GC content: 59.47
Gene sequence:
>1653_bases ATGACTTTGCTTGCAAAACGGCAGGAAAGGAGTATCGTCCCCCGCATGTACTATATCACCACGGCCATTGACTACACCAA CGGACCGCCCCACATCGGGCACGCTTATGAAAAAGTCCTGGCGGACGTCCTCGCGCGCTGGCACCGGATGAAGGGGGAGG AAGTCTATTTCCTGACCGGGGTGGACCAGCATGGGCAGAAAGTGCAGCAGACGGCGGAAAAGCTGGGCATTACGCCGCAG GAGCATGTCAACAATATCACAGGGCAATTCCTGGCGTTGTGGGACCGACTGGGCATCAGCAATGACGGATGGGCCTCCAC GACGGATCCGCGCCACAAGGCCTGCGTGCAGAAAATCCTGACGGACCTGAAGGACAAGGGGCAGCTTTACAAAAAATCCT ACAAGGGATTCTACTCCGTGCGCCAGGAACAGTTCCTGACGGACAAGGAACGGGACGCGGAAGGCAACTTCGGCCCGGAA TGGGGGGAAGTGGTGGAACTGGAGGAAGAAAACTGGTATTTCCGCCTGACCGACCATGTGGAATGGATGAAGCAATTCGT GGAAAAGAGCAGTGATTTTGTCCTTCCGTCCTTCCGCAAGGCGGAAGTGCTCAACGCCATTGACTTTGACTCGGACCTCT GCATTTCCCGCCCCAAGAGCCGCCTTTCCTGGGGAATCGAATTCCCGTTCGACCCCGAATTCGTCACCTACGTCTGGTTT GACGCCCTGATCAACTACATTTCCTTCGCCGGCTACCTGGCGGAGCCGGACAGCGGCCTGCCGGAATTCTCCAAACTCTG GCCCGCAGACTGCGAAGTCATCGGCAAAGACATCCTGGTGCCCGCCCACGGCGTGTACTGGCCCGCCATGCTGCATGCCA TGGGCTTTTCCGACGAGGAAATGCCCACCCTGCTCGTGCACGGCTGGTGGAACATCAACGGGGAAAAAATGTCCAAGTCC ATCGGCAACGTGGTGGACCCCAACCTGCTGGCGGAACAATTCGGCCCGGAACCTGTGCGCTATTACCTGGTGCGGGACAT CACCACCGGGAAGGACGCCAACTTTGACGCGGACCGCTTGGTCATGCTGTACAATACGGAGCTGGCCAACGACCTCGGCA ACCTGTGCAACCGCTCCATCAACATGACGCGCCGCTATTGCGACTCCGTTATCTCCGGAGCGGAGGCATATGATGACGAA GCCTCCAAAGCCCTGCGCTCCACCATGGACCAGGCCGTCACCCTGTTTTCCAAATACATGGACGACAACATGGCCTCCGA TGCCCTGGCGGCCCTGAACGCCCAGGTTTCCGCCTGTAACGCGTACATTGAGCAGCAGCAGCCCTGGCAGCTGGCCAAGG ATGAAGCCTCCGCCCCGCGCCTCCGCTGCGTGCTGCGCCATTTGCTGGAATGCTGCGCCCAAACGGGCTATCTCATCGGC TGCGTCCTCCCTGACGCCTCCGCCCGCATTCTGGGCCAGCTCAACGCCGGGGATCTGTTCCGGGGCCTTACGCCGGCCGC GCTGAAGTGGGGAATCCTCCCCGCAGGGCACCGCATCAATGATCCCGCCCCCGTTTTTCCCCGCATTCTTTCGGAAGAGG AAAAGGCCAAACTGGCTGAAAAAGCGGCCAGGGCGGCAAAAAAACAAGGCTGA
Upstream 100 bases:
>100_bases CGGTGGAAAGGGAATATCTGAACAACCCCTTCCGCCGTTTCGCCCGCGGCCCCCCCTTACTCTCCCATCCCATGCTGAAA AACACGCCCGAGATGCCGCC
Downstream 100 bases:
>100_bases TTCCCGTGAATTCCCCCGCATCCTTCGTCAAATCCCTGCTGGCCCAATGCTGCCTGGGCGGCATTTGCGAGTGGGTGGTC TGCCCCGGCGCGCGCAACAT
Product: methionyl-tRNA synthetase
Products: NA
Alternate protein names: Methionine--tRNA ligase; MetRS [H]
Number of amino acids: Translated: 550; Mature: 549
Protein sequence:
>550_residues MTLLAKRQERSIVPRMYYITTAIDYTNGPPHIGHAYEKVLADVLARWHRMKGEEVYFLTGVDQHGQKVQQTAEKLGITPQ EHVNNITGQFLALWDRLGISNDGWASTTDPRHKACVQKILTDLKDKGQLYKKSYKGFYSVRQEQFLTDKERDAEGNFGPE WGEVVELEEENWYFRLTDHVEWMKQFVEKSSDFVLPSFRKAEVLNAIDFDSDLCISRPKSRLSWGIEFPFDPEFVTYVWF DALINYISFAGYLAEPDSGLPEFSKLWPADCEVIGKDILVPAHGVYWPAMLHAMGFSDEEMPTLLVHGWWNINGEKMSKS IGNVVDPNLLAEQFGPEPVRYYLVRDITTGKDANFDADRLVMLYNTELANDLGNLCNRSINMTRRYCDSVISGAEAYDDE ASKALRSTMDQAVTLFSKYMDDNMASDALAALNAQVSACNAYIEQQQPWQLAKDEASAPRLRCVLRHLLECCAQTGYLIG CVLPDASARILGQLNAGDLFRGLTPAALKWGILPAGHRINDPAPVFPRILSEEEKAKLAEKAARAAKKQG
Sequences:
>Translated_550_residues MTLLAKRQERSIVPRMYYITTAIDYTNGPPHIGHAYEKVLADVLARWHRMKGEEVYFLTGVDQHGQKVQQTAEKLGITPQ EHVNNITGQFLALWDRLGISNDGWASTTDPRHKACVQKILTDLKDKGQLYKKSYKGFYSVRQEQFLTDKERDAEGNFGPE WGEVVELEEENWYFRLTDHVEWMKQFVEKSSDFVLPSFRKAEVLNAIDFDSDLCISRPKSRLSWGIEFPFDPEFVTYVWF DALINYISFAGYLAEPDSGLPEFSKLWPADCEVIGKDILVPAHGVYWPAMLHAMGFSDEEMPTLLVHGWWNINGEKMSKS IGNVVDPNLLAEQFGPEPVRYYLVRDITTGKDANFDADRLVMLYNTELANDLGNLCNRSINMTRRYCDSVISGAEAYDDE ASKALRSTMDQAVTLFSKYMDDNMASDALAALNAQVSACNAYIEQQQPWQLAKDEASAPRLRCVLRHLLECCAQTGYLIG CVLPDASARILGQLNAGDLFRGLTPAALKWGILPAGHRINDPAPVFPRILSEEEKAKLAEKAARAAKKQG >Mature_549_residues TLLAKRQERSIVPRMYYITTAIDYTNGPPHIGHAYEKVLADVLARWHRMKGEEVYFLTGVDQHGQKVQQTAEKLGITPQE HVNNITGQFLALWDRLGISNDGWASTTDPRHKACVQKILTDLKDKGQLYKKSYKGFYSVRQEQFLTDKERDAEGNFGPEW GEVVELEEENWYFRLTDHVEWMKQFVEKSSDFVLPSFRKAEVLNAIDFDSDLCISRPKSRLSWGIEFPFDPEFVTYVWFD ALINYISFAGYLAEPDSGLPEFSKLWPADCEVIGKDILVPAHGVYWPAMLHAMGFSDEEMPTLLVHGWWNINGEKMSKSI GNVVDPNLLAEQFGPEPVRYYLVRDITTGKDANFDADRLVMLYNTELANDLGNLCNRSINMTRRYCDSVISGAEAYDDEA SKALRSTMDQAVTLFSKYMDDNMASDALAALNAQVSACNAYIEQQQPWQLAKDEASAPRLRCVLRHLLECCAQTGYLIGC VLPDASARILGQLNAGDLFRGLTPAALKWGILPAGHRINDPAPVFPRILSEEEKAKLAEKAARAAKKQG
Specific function: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation [H]
COG id: COG0143
COG function: function code J; Methionyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI24308436, Length=512, Percent_Identity=34.375, Blast_Score=267, Evalue=2e-71, Organism=Homo sapiens, GI14043022, Length=587, Percent_Identity=24.0204429301533, Blast_Score=121, Evalue=2e-27, Organism=Escherichia coli, GI1788432, Length=556, Percent_Identity=25.3597122302158, Blast_Score=167, Evalue=2e-42, Organism=Caenorhabditis elegans, GI212645096, Length=501, Percent_Identity=33.7325349301397, Blast_Score=253, Evalue=1e-67, Organism=Caenorhabditis elegans, GI71992781, Length=394, Percent_Identity=32.48730964467, Blast_Score=175, Evalue=4e-44, Organism=Caenorhabditis elegans, GI17540794, Length=599, Percent_Identity=25.7095158597663, Blast_Score=137, Evalue=2e-32, Organism=Saccharomyces cerevisiae, GI6321610, Length=551, Percent_Identity=30.3085299455535, Blast_Score=226, Evalue=7e-60, Organism=Saccharomyces cerevisiae, GI6321704, Length=575, Percent_Identity=24.8695652173913, Blast_Score=109, Evalue=9e-25, Organism=Drosophila melanogaster, GI21358483, Length=569, Percent_Identity=32.1616871704745, Blast_Score=258, Evalue=1e-68, Organism=Drosophila melanogaster, GI24655311, Length=576, Percent_Identity=26.5625, Blast_Score=157, Evalue=2e-38,
Paralogues:
None
Copy number: 871 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR015413 - InterPro: IPR004495 - InterPro: IPR014758 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR014729 - InterPro: IPR002547 - InterPro: IPR009080 - InterPro: IPR013155 [H]
Pfam domain/function: PF08264 Anticodon_1; PF09334 tRNA-synt_1g; PF01588 tRNA_bind [H]
EC number: =6.1.1.10 [H]
Molecular weight: Translated: 62133; Mature: 62002
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLAKRQERSIVPRMYYITTAIDYTNGPPHIGHAYEKVLADVLARWHRMKGEEVYFLTG CCCCCCCHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC VDQHGQKVQQTAEKLGITPQEHVNNITGQFLALWDRLGISNDGWASTTDPRHKACVQKIL CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH TDLKDKGQLYKKSYKGFYSVRQEQFLTDKERDAEGNFGPEWGEVVELEEENWYFRLTDHV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHH EWMKQFVEKSSDFVLPSFRKAEVLNAIDFDSDLCISRPKSRLSWGIEFPFDPEFVTYVWF HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCCHHHHHHHH DALINYISFAGYLAEPDSGLPEFSKLWPADCEVIGKDILVPAHGVYWPAMLHAMGFSDEE HHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHCCCCEECCCCHHHHHHHHHHCCCCCC MPTLLVHGWWNINGEKMSKSIGNVVDPNLLAEQFGPEPVRYYLVRDITTGKDANFDADRL CCEEEEEEEECCCHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCE VMLYNTELANDLGNLCNRSINMTRRYCDSVISGAEAYDDEASKALRSTMDQAVTLFSKYM EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHH DDNMASDALAALNAQVSACNAYIEQQQPWQLAKDEASAPRLRCVLRHLLECCAQTGYLIG CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEE CVLPDASARILGQLNAGDLFRGLTPAALKWGILPAGHRINDPAPVFPRILSEEEKAKLAE EECCCCHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHH KAARAAKKQG HHHHHHHCCC >Mature Secondary Structure TLLAKRQERSIVPRMYYITTAIDYTNGPPHIGHAYEKVLADVLARWHRMKGEEVYFLTG CCCCCCHHHCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC VDQHGQKVQQTAEKLGITPQEHVNNITGQFLALWDRLGISNDGWASTTDPRHKACVQKIL CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH TDLKDKGQLYKKSYKGFYSVRQEQFLTDKERDAEGNFGPEWGEVVELEEENWYFRLTDHV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHH EWMKQFVEKSSDFVLPSFRKAEVLNAIDFDSDLCISRPKSRLSWGIEFPFDPEFVTYVWF HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHCCCCCCCCCCCHHHHHHHH DALINYISFAGYLAEPDSGLPEFSKLWPADCEVIGKDILVPAHGVYWPAMLHAMGFSDEE HHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHCCCCEECCCCHHHHHHHHHHCCCCCC MPTLLVHGWWNINGEKMSKSIGNVVDPNLLAEQFGPEPVRYYLVRDITTGKDANFDADRL CCEEEEEEEECCCHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCE VMLYNTELANDLGNLCNRSINMTRRYCDSVISGAEAYDDEASKALRSTMDQAVTLFSKYM EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHH DDNMASDALAALNAQVSACNAYIEQQQPWQLAKDEASAPRLRCVLRHLLECCAQTGYLIG CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEE CVLPDASARILGQLNAGDLFRGLTPAALKWGILPAGHRINDPAPVFPRILSEEEKAKLAE EECCCCHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHCHHHHHHHHH KAARAAKKQG HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]