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The map label for this gene is rsmB [H]

Identifier: 187735067

GI number: 187735067

Start: 660401

End: 661639

Strand: Direct

Name: rsmB [H]

Synonym: Amuc_0561

Alternate gene names: 187735067

Gene position: 660401-661639 (Clockwise)

Preceding gene: 187735066

Following gene: 187735068

Centisome position: 24.79

GC content: 60.21

Gene sequence:

>1239_bases
GTGAAGAACAATCCCCCCTCCCCCCGCCAGACAGCACTAAATTGCCTGAGGAGCTGGCATGCAGGCCGCTCCTTCGCGGA
AACCCTCGTGGACCGGGAATGTTCACGAACCGCGCTTCCATCGGCAGACAGGCACCTGGTGCAGGCTTTGGTCTTCAGCG
TATTGCGCAACCAGACCTGGCTGGACCACGTCATCGGAACCCTCCGGAAAGGCAGGCTGGACGTGGAAGCGCGTCTTATT
CTCCAACTGGGGTTGAGCCAGCTTTTTCTGCTGGGCATGGCGGACCACGCCGCTGTGTATGAAACCGTGAATCTCGCGTC
CGTACGCCTGAGAGGACTGGTAAACGCTATCCTGCGCAACGCTTTGCGGCGGGAGAAAACCATTCTGGAGGAACGGGAAA
AACTTCCGCTTTCCATTCATTATTCCACCCCCGCGTGGCTGGTACGGAGATGGACGGAACAAATGGGGCCGCAAATGGCC
CGCGACCTGCTCCGCTGGAACAATACCACGCCGCGCCTGTATGTGCGCGCCAATCCTCTGATGCCCATGAAAAATATTCC
GGCCTCCCTCGCCCCGCTGGACCGCGCGCCCGGCTGGTTCTCCGTGGAAGGCCTTCTGCCGCTGGAGGAAATTAAAACAG
GCTCCCTTTACGTAGCGGATCCTTCCACCCGTTATTCCATTGATTTGCTGGCCCCACAGCCCGGAGAGGAAATTCTGGAC
GCCTGCGCCGCCCCCGGCGGCAAATCCGCCGCCATCATCGCCGCTACCGGAGGCAAAGCCCACCTGACCGCCACGGATCT
CCACGAACACCGGCTGCCCACCCTGAAGGAAAACCTGGACAGGCAGGGTTCTTCCTTCGTCAGGACGGCGCAGGCGGACT
GGTCCCTTCCCTGCCGCACGGAATGGAAGGGCCGCTTTGACGCCGTGCTTCTGGACGTTCCCTGTTCCAACACCGGAGTC
ATCCAACGCCGCGTGGACGTGCGCTGGCGCCTGACTCCGGAGGAAATCCGTCGCCTGACCGCACTCCAGAAGACCATCCT
GGAAAATGCCTCCCGCGCCGTCAAACCGGGCGGCAGACTGGTTTATTCCACCTGTTCCATTGACGCGGAGGAAGACGGAC
TGCTGATCAGGGACTTTTTGCAGAACCATCCGGAATGGACGCTGAAAGAAGAAAAACTTATCCTTCCCCACGAGGAAAAA
TCGGACGGCGCGTATGCGGCCCTTTTGATCTGTGCTTGA

Upstream 100 bases:

>100_bases
GAAAAGACAGGTGAAATCCGGAGCTGGCCCGGCATCCTCCTTTTTCCGCCGGGCGTTTTTGCAGGTTGAAACCTGAACGT
TCCGCATGTAGAGTTCCCCG

Downstream 100 bases:

>100_bases
CCTCAGCTTCAATTTGTCAACAATGCGTGTTCCTGATTAATATCATTCCATTATGTCCCGCAAACCCATCATTGCCGCCA
ACTGGAAGATGAACATCGGC

Product: sun protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MKNNPPSPRQTALNCLRSWHAGRSFAETLVDRECSRTALPSADRHLVQALVFSVLRNQTWLDHVIGTLRKGRLDVEARLI
LQLGLSQLFLLGMADHAAVYETVNLASVRLRGLVNAILRNALRREKTILEEREKLPLSIHYSTPAWLVRRWTEQMGPQMA
RDLLRWNNTTPRLYVRANPLMPMKNIPASLAPLDRAPGWFSVEGLLPLEEIKTGSLYVADPSTRYSIDLLAPQPGEEILD
ACAAPGGKSAAIIAATGGKAHLTATDLHEHRLPTLKENLDRQGSSFVRTAQADWSLPCRTEWKGRFDAVLLDVPCSNTGV
IQRRVDVRWRLTPEEIRRLTALQKTILENASRAVKPGGRLVYSTCSIDAEEDGLLIRDFLQNHPEWTLKEEKLILPHEEK
SDGAYAALLICA

Sequences:

>Translated_412_residues
MKNNPPSPRQTALNCLRSWHAGRSFAETLVDRECSRTALPSADRHLVQALVFSVLRNQTWLDHVIGTLRKGRLDVEARLI
LQLGLSQLFLLGMADHAAVYETVNLASVRLRGLVNAILRNALRREKTILEEREKLPLSIHYSTPAWLVRRWTEQMGPQMA
RDLLRWNNTTPRLYVRANPLMPMKNIPASLAPLDRAPGWFSVEGLLPLEEIKTGSLYVADPSTRYSIDLLAPQPGEEILD
ACAAPGGKSAAIIAATGGKAHLTATDLHEHRLPTLKENLDRQGSSFVRTAQADWSLPCRTEWKGRFDAVLLDVPCSNTGV
IQRRVDVRWRLTPEEIRRLTALQKTILENASRAVKPGGRLVYSTCSIDAEEDGLLIRDFLQNHPEWTLKEEKLILPHEEK
SDGAYAALLICA
>Mature_412_residues
MKNNPPSPRQTALNCLRSWHAGRSFAETLVDRECSRTALPSADRHLVQALVFSVLRNQTWLDHVIGTLRKGRLDVEARLI
LQLGLSQLFLLGMADHAAVYETVNLASVRLRGLVNAILRNALRREKTILEEREKLPLSIHYSTPAWLVRRWTEQMGPQMA
RDLLRWNNTTPRLYVRANPLMPMKNIPASLAPLDRAPGWFSVEGLLPLEEIKTGSLYVADPSTRYSIDLLAPQPGEEILD
ACAAPGGKSAAIIAATGGKAHLTATDLHEHRLPTLKENLDRQGSSFVRTAQADWSLPCRTEWKGRFDAVLLDVPCSNTGV
IQRRVDVRWRLTPEEIRRLTALQKTILENASRAVKPGGRLVYSTCSIDAEEDGLLIRDFLQNHPEWTLKEEKLILPHEEK
SDGAYAALLICA

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=228, Percent_Identity=32.0175438596491, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI76150623, Length=228, Percent_Identity=32.0175438596491, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI8922322, Length=176, Percent_Identity=32.3863636363636, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI23199998, Length=176, Percent_Identity=32.3863636363636, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI270288816, Length=176, Percent_Identity=32.3863636363636, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI270288818, Length=176, Percent_Identity=32.3863636363636, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI32698918, Length=155, Percent_Identity=32.9032258064516, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI40316918, Length=172, Percent_Identity=32.5581395348837, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI11545785, Length=224, Percent_Identity=31.6964285714286, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI39995082, Length=167, Percent_Identity=31.1377245508982, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI301336155, Length=167, Percent_Identity=31.1377245508982, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI2367212, Length=397, Percent_Identity=34.2569269521411, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI87081985, Length=178, Percent_Identity=32.5842696629214, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17536757, Length=268, Percent_Identity=27.9850746268657, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71998419, Length=177, Percent_Identity=30.5084745762712, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115534021, Length=177, Percent_Identity=30.5084745762712, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25143471, Length=164, Percent_Identity=29.8780487804878, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17509941, Length=184, Percent_Identity=30.4347826086957, Blast_Score=65, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6324268, Length=173, Percent_Identity=35.2601156069364, Blast_Score=90, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6319447, Length=183, Percent_Identity=28.9617486338798, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI22024126, Length=214, Percent_Identity=30.8411214953271, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI19920494, Length=168, Percent_Identity=32.1428571428571, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21355201, Length=172, Percent_Identity=27.906976744186, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: 2.1.1.-

Molecular weight: Translated: 46179; Mature: 46179

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS00037 MYB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNPPSPRQTALNCLRSWHAGRSFAETLVDRECSRTALPSADRHLVQALVFSVLRNQTW
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHH
LDHVIGTLRKGRLDVEARLILQLGLSQLFLLGMADHAAVYETVNLASVRLRGLVNAILRN
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALRREKTILEEREKLPLSIHYSTPAWLVRRWTEQMGPQMARDLLRWNNTTPRLYVRANPL
HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCC
MPMKNIPASLAPLDRAPGWFSVEGLLPLEEIKTGSLYVADPSTRYSIDLLAPQPGEEILD
CCHHCCCCCCCCCCCCCCCEEECCCCCHHHCCCCCEEEECCCCCEEEEEECCCCCHHHHH
ACAAPGGKSAAIIAATGGKAHLTATDLHEHRLPTLKENLDRQGSSFVRTAQADWSLPCRT
HHCCCCCCCEEEEEECCCCEEEEEEHHHHHCCCHHHHHHCCCCCHHEEECCCCCCCCCCC
EWKGRFDAVLLDVPCSNTGVIQRRVDVRWRLTPEEIRRLTALQKTILENASRAVKPGGRL
CCCCCEEEEEEECCCCCCCEEEEEECEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VYSTCSIDAEEDGLLIRDFLQNHPEWTLKEEKLILPHEEKSDGAYAALLICA
EEEEECCCCCCCCCHHHHHHHCCCCEEECCCEEECCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKNNPPSPRQTALNCLRSWHAGRSFAETLVDRECSRTALPSADRHLVQALVFSVLRNQTW
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHH
LDHVIGTLRKGRLDVEARLILQLGLSQLFLLGMADHAAVYETVNLASVRLRGLVNAILRN
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALRREKTILEEREKLPLSIHYSTPAWLVRRWTEQMGPQMARDLLRWNNTTPRLYVRANPL
HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECCC
MPMKNIPASLAPLDRAPGWFSVEGLLPLEEIKTGSLYVADPSTRYSIDLLAPQPGEEILD
CCHHCCCCCCCCCCCCCCCEEECCCCCHHHCCCCCEEEECCCCCEEEEEECCCCCHHHHH
ACAAPGGKSAAIIAATGGKAHLTATDLHEHRLPTLKENLDRQGSSFVRTAQADWSLPCRT
HHCCCCCCCEEEEEECCCCEEEEEEHHHHHCCCHHHHHHCCCCCHHEEECCCCCCCCCCC
EWKGRFDAVLLDVPCSNTGVIQRRVDVRWRLTPEEIRRLTALQKTILENASRAVKPGGRL
CCCCCEEEEEEECCCCCCCEEEEEECEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VYSTCSIDAEEDGLLIRDFLQNHPEWTLKEEKLILPHEEKSDGAYAALLICA
EEEEECCCCCCCCCHHHHHHHCCCCEEECCCEEECCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]