| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
Click here to switch to the map view.
The map label for this gene is 187735057
Identifier: 187735057
GI number: 187735057
Start: 649937
End: 650608
Strand: Reverse
Name: 187735057
Synonym: Amuc_0550
Alternate gene names: NA
Gene position: 650608-649937 (Counterclockwise)
Preceding gene: 187735060
Following gene: 187735056
Centisome position: 24.42
GC content: 57.89
Gene sequence:
>672_bases ATGAATTTAAGAATAATTGCCACCCTGTCTTGTGCCGTCGCGGCCATGTTTGTCAGCAGCTGTTCGACAAACGGCGCTGT AACCGGCATGGGGAAATCCAGTAGTGACGCTCTTGTTTTGGCCCGTGTAGGTGAAACTGCCCAGGGATTCGTCCAGCCCC TGGCACCCAGTCGTTCGGCAGCGCCTTCTTCCAAACTTCCCAAGTTGGGGCGCGACAAGCACAAGATGCCGTTTTATCAT CCCGCCCAGCGCACCCGCGTAGTGCGCACCACGGCTTATACCCATTCCGAACGAGACCATTTGGCCTATGGCCCCCGGAA TGCCGTCGGTACGGCGCTGAAATACACGTCTTCCGTCCGCAGCGCCGCTGCAGACTGGTCCGTTTATCCCTTGGGGACTA CTTTCCGCATCAAGGGCCAGCCCTACCTTTACGTTGTTGATGATTACGGAAGCGCCCTGGTCGGAACCGGAACCATTGAT ATTTACCAGCCCAACAAAAAGCTGATGAAGGAATGGGGCCGCCGTTATGTGGAACTGACTATCGTCCGCTGGGGAGATCC CGCCAACAGTCTGGAGGTGCTCGGTAGCCGTCGCGGCTACAGGCACTGCCGCGCCATGTATGCGGCCCTGCAGCACCGCG TTTCCAAGGGGTTTTACGCCAAGGCCGACTGA
Upstream 100 bases:
>100_bases GTACCCAAGAGCCGCCGTTGCCGATTTTCCGGCTTCCGCACATGGCCTGAAGGTTTTGCCGGAGTGACTGCCATGTGTAT GGCGCCTAACCTCGTACCGC
Downstream 100 bases:
>100_bases CCCATGTTTTCCATCCCGGCGCCGCCATCGCTGCATGGCGGCGCTTTTTTATTTTCCGCCGTGCGGGCGGAGTGGTAATC TGGCGGCATGAATACGGAAA
Product: 3D domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 223; Mature: 223
Protein sequence:
>223_residues MNLRIIATLSCAVAAMFVSSCSTNGAVTGMGKSSSDALVLARVGETAQGFVQPLAPSRSAAPSSKLPKLGRDKHKMPFYH PAQRTRVVRTTAYTHSERDHLAYGPRNAVGTALKYTSSVRSAAADWSVYPLGTTFRIKGQPYLYVVDDYGSALVGTGTID IYQPNKKLMKEWGRRYVELTIVRWGDPANSLEVLGSRRGYRHCRAMYAALQHRVSKGFYAKAD
Sequences:
>Translated_223_residues MNLRIIATLSCAVAAMFVSSCSTNGAVTGMGKSSSDALVLARVGETAQGFVQPLAPSRSAAPSSKLPKLGRDKHKMPFYH PAQRTRVVRTTAYTHSERDHLAYGPRNAVGTALKYTSSVRSAAADWSVYPLGTTFRIKGQPYLYVVDDYGSALVGTGTID IYQPNKKLMKEWGRRYVELTIVRWGDPANSLEVLGSRRGYRHCRAMYAALQHRVSKGFYAKAD >Mature_223_residues MNLRIIATLSCAVAAMFVSSCSTNGAVTGMGKSSSDALVLARVGETAQGFVQPLAPSRSAAPSSKLPKLGRDKHKMPFYH PAQRTRVVRTTAYTHSERDHLAYGPRNAVGTALKYTSSVRSAAADWSVYPLGTTFRIKGQPYLYVVDDYGSALVGTGTID IYQPNKKLMKEWGRRYVELTIVRWGDPANSLEVLGSRRGYRHCRAMYAALQHRVSKGFYAKAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24468; Mature: 24468
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLRIIATLSCAVAAMFVSSCSTNGAVTGMGKSSSDALVLARVGETAQGFVQPLAPSRSA CCEEEEEHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCHHHHHHHCCCCCCCC APSSKLPKLGRDKHKMPFYHPAQRTRVVRTTAYTHSERDHLAYGPRNAVGTALKYTSSVR CCCCCCCCCCCCCCCCCCCCCHHHCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH SAAADWSVYPLGTTFRIKGQPYLYVVDDYGSALVGTGTIDIYQPNKKLMKEWGRRYVELT HHHCCCEEEECCEEEEECCCEEEEEEECCCCEEEECCEEEEECCCHHHHHHHCCEEEEEE IVRWGDPANSLEVLGSRRGYRHCRAMYAALQHRVSKGFYAKAD EEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEECCC >Mature Secondary Structure MNLRIIATLSCAVAAMFVSSCSTNGAVTGMGKSSSDALVLARVGETAQGFVQPLAPSRSA CCEEEEEHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCHHHHHHHCCCCCCCC APSSKLPKLGRDKHKMPFYHPAQRTRVVRTTAYTHSERDHLAYGPRNAVGTALKYTSSVR CCCCCCCCCCCCCCCCCCCCCHHHCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH SAAADWSVYPLGTTFRIKGQPYLYVVDDYGSALVGTGTIDIYQPNKKLMKEWGRRYVELT HHHCCCEEEECCEEEEECCCEEEEEEECCCCEEEECCEEEEECCCHHHHHHHCCEEEEEE IVRWGDPANSLEVLGSRRGYRHCRAMYAALQHRVSKGFYAKAD EEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA