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The map label for this gene is yulB [H]

Identifier: 187734975

GI number: 187734975

Start: 557272

End: 558021

Strand: Direct

Name: yulB [H]

Synonym: Amuc_0468

Alternate gene names: 187734975

Gene position: 557272-558021 (Clockwise)

Preceding gene: 187734974

Following gene: 187734978

Centisome position: 20.92

GC content: 52.67

Gene sequence:

>750_bases
ATGTATTTAGCATCCCAACGCAAAGAGTTCATTCTGAAAACGCTGGCTGAACATGGAGCTGCAAGGACCATTGCTCTGGC
CAAACAGATGAAGGTCACGGATGAAACGGTCCGCAATGATTTGATTAACCTTGAAAAACGCGGCTTCCTCAAGCGCGTCC
ACGGCGGCGCACTGGCGCTTACTCACAAATCCCTCCATGAAGACATTGTCACTCAAGATGATGTGTCTATCAGGATTGCA
AAAAAAACCGTTCAGAATATTCCCGCTTCCGTGGTTATGTTCATTGACAGCAGCACCATGGGCTACCAAATATGCAACCA
CATCAATTCCAAAGATACGCATGTGGTTTCCAACAACCCCACGTTGCTGACCCGGCTTGAAGGCATTCCGAACCTGAGCT
TCTATTGCACGGGCGGACACTTCGACCGCGAAGCCCTGGTCTATGTAGGGCAGGACGCCGCCAAGGCCGCCGGATCCCTG
AGCATTGACATGGTCGTGCTGACGCCAGACTGCTACTCCCCCAAGCATGGTGCCGGATACAAGAACATGTTGCAATCCGA
ATTCATCAAGAGCGTCATCCCCGCGGATGCCAAGGTAATCATCGCCATGCCCTCCACCAGCGTAGCGAACAACCCGGCAT
TCTATACCGTTGCGCCCTCCCAGGTTTCCATGCTCATCACTGATGAGGCCCTTTCTCCGGAAATGGCCGACCAGATTGAA
AAGAGCGGCGTCAAGGTGGAACTCGCCTAA

Upstream 100 bases:

>100_bases
ACTTAGAATTTCTAACGCTTGACTGTTCTAGTGAAAAATTGTTAGAAAACAACTTAACACCTAGAACGTGTAAACATTCT
ACATAGAAAAACAAAATCAA

Downstream 100 bases:

>100_bases
CGCCGGCCTGCTTTACAGGGGGCGGAAGTTCATCGGAACTTCCGCCTTTTTTATAACGATCATATCCTCTCTCTTTTCCA
TTCCATCCGGTACTCCCGGC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MYLASQRKEFILKTLAEHGAARTIALAKQMKVTDETVRNDLINLEKRGFLKRVHGGALALTHKSLHEDIVTQDDVSIRIA
KKTVQNIPASVVMFIDSSTMGYQICNHINSKDTHVVSNNPTLLTRLEGIPNLSFYCTGGHFDREALVYVGQDAAKAAGSL
SIDMVVLTPDCYSPKHGAGYKNMLQSEFIKSVIPADAKVIIAMPSTSVANNPAFYTVAPSQVSMLITDEALSPEMADQIE
KSGVKVELA

Sequences:

>Translated_249_residues
MYLASQRKEFILKTLAEHGAARTIALAKQMKVTDETVRNDLINLEKRGFLKRVHGGALALTHKSLHEDIVTQDDVSIRIA
KKTVQNIPASVVMFIDSSTMGYQICNHINSKDTHVVSNNPTLLTRLEGIPNLSFYCTGGHFDREALVYVGQDAAKAAGSL
SIDMVVLTPDCYSPKHGAGYKNMLQSEFIKSVIPADAKVIIAMPSTSVANNPAFYTVAPSQVSMLITDEALSPEMADQIE
KSGVKVELA
>Mature_249_residues
MYLASQRKEFILKTLAEHGAARTIALAKQMKVTDETVRNDLINLEKRGFLKRVHGGALALTHKSLHEDIVTQDDVSIRIA
KKTVQNIPASVVMFIDSSTMGYQICNHINSKDTHVVSNNPTLLTRLEGIPNLSFYCTGGHFDREALVYVGQDAAKAAGSL
SIDMVVLTPDCYSPKHGAGYKNMLQSEFIKSVIPADAKVIIAMPSTSVANNPAFYTVAPSQVSMLITDEALSPEMADQIE
KSGVKVELA

Specific function: Probable Repressor For The Aga Operon For N-Acetyl Galactosamine Transport And Metabolism. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=255, Percent_Identity=24.3137254901961, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI226510968, Length=241, Percent_Identity=26.1410788381743, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790635, Length=249, Percent_Identity=21.285140562249, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27120; Mature: 27120

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLASQRKEFILKTLAEHGAARTIALAKQMKVTDETVRNDLINLEKRGFLKRVHGGALAL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
THKSLHEDIVTQDDVSIRIAKKTVQNIPASVVMFIDSSTMGYQICNHINSKDTHVVSNNP
EHHHHHHHHCCCCCCEEEEHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCCCCEEECCCC
TLLTRLEGIPNLSFYCTGGHFDREALVYVGQDAAKAAGSLSIDMVVLTPDCYSPKHGAGY
EEEEEECCCCCCEEEECCCCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCCCCCCCCH
KNMLQSEFIKSVIPADAKVIIAMPSTSVANNPAFYTVAPSQVSMLITDEALSPEMADQIE
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHH
KSGVKVELA
HCCCEEEEC
>Mature Secondary Structure
MYLASQRKEFILKTLAEHGAARTIALAKQMKVTDETVRNDLINLEKRGFLKRVHGGALAL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
THKSLHEDIVTQDDVSIRIAKKTVQNIPASVVMFIDSSTMGYQICNHINSKDTHVVSNNP
EHHHHHHHHCCCCCCEEEEHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCCCCEEECCCC
TLLTRLEGIPNLSFYCTGGHFDREALVYVGQDAAKAAGSLSIDMVVLTPDCYSPKHGAGY
EEEEEECCCCCCEEEECCCCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCCCCCCCCH
KNMLQSEFIKSVIPADAKVIIAMPSTSVANNPAFYTVAPSQVSMLITDEALSPEMADQIE
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHH
KSGVKVELA
HCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]