| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734962
Identifier: 187734962
GI number: 187734962
Start: 543375
End: 544352
Strand: Direct
Name: 187734962
Synonym: Amuc_0455
Alternate gene names: NA
Gene position: 543375-544352 (Clockwise)
Preceding gene: 187734961
Following gene: 187734963
Centisome position: 20.4
GC content: 57.16
Gene sequence:
>978_bases ATGAACCTTCATCTTTTCCTTGCTTCCCTGGCAGCCACGCTCTCACTGGGCATTGCGGCACAAGCTTCTCCCGCCAAAGT GGCCTGCGTAGGGGACAGCATCACCTTCGGCTCCGGCCTTAAACCCGGAGAAGCCCGGTATCCGCAAGTGCTCGCCACGC TAATGGGCCCGGACTTTGACGTCAGAGGATTCGGCAATCCCGGAAAAACGGCGGGCGACTATCCGGGCCAAGCAGGACGC TGGTACGGCAGCACCAGGGAACACAAGCAAGCCCTGGACTTCAAGGCGGATATTTATATTTGCAACCTTGGCATCAACGA CACAGGCCGATGGTGGAACCCCGAACTGTTCTCCAAAGGCTATGAAGCGCTGCTCCAGGCATGGAAAAACGCCAATCCCA AAGCACGGTTCTTTGCCTGGGGCCTGCTGGGGCCGGACTACCGCGGCCCGCTCAACAAAAAGGCATTCCCCGGCAACTGC TATCCGGACGTACGCAAATATGCAGGCTCGGACAACGGCTCCGCCGCCAACCGCCCGGAAGCGGAAAAATTGATTGCCGC CGTAGCGCGCAAGTACAAAGTCAGTCTCTTTGATGCGCTGCACCCGCTCTCCGACCATCCGGAATGGTATGTTGACGGGC TGCATCCTACGGAACAGGGCGCACGGCGTATTGCGGAAATCACCTTCGCCAAGCTGGCAAAAAGCCTCAAGATTAAGCAG CCCGTCCCCAGGCTGGAACCGGGTACCGGCAACGTGATCATCAACAACCCCGGTAATTCCGGCATTCTTCTGGACGGATG GAAATTGACGGACGGCTCCAATACGCTCATTTTTGAAAACTCCACCGTCATCCATCCCAAGGACAGGCTTATCATCGCCA TTGGCCCGGAGACCCAAAAAGACCCGACCAGGCCCCTGCAAATCAAATCCGCCAAATCCCCCGCAGCTTTCCGCCTCATT CCCGCAAAAAAATATTAA
Upstream 100 bases:
>100_bases CGTGACCCCCAACCTGGTCAACGGCAACCAACTCCCCGCCCGTCCCTTCCGGACGGACACACCCGTTCTGAAAAAATAAC TCTTACCACGCCATCATTCC
Downstream 100 bases:
>100_bases AAACCACTGGAACAGTTTCATTGGGAACATGCAGCAGTTCCGTATGTTCCCAAATACCCGGCGCACTCTATTCGCGCCCT TACGCACCGAGGCAGGCGGC
Product: lipolytic protein G-D-S-L family
Products: NA
Alternate protein names: Xylanase; O-Antigen-Like Protein; Lipolytic Protein G-D-S-L Family
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MNLHLFLASLAATLSLGIAAQASPAKVACVGDSITFGSGLKPGEARYPQVLATLMGPDFDVRGFGNPGKTAGDYPGQAGR WYGSTREHKQALDFKADIYICNLGINDTGRWWNPELFSKGYEALLQAWKNANPKARFFAWGLLGPDYRGPLNKKAFPGNC YPDVRKYAGSDNGSAANRPEAEKLIAAVARKYKVSLFDALHPLSDHPEWYVDGLHPTEQGARRIAEITFAKLAKSLKIKQ PVPRLEPGTGNVIINNPGNSGILLDGWKLTDGSNTLIFENSTVIHPKDRLIIAIGPETQKDPTRPLQIKSAKSPAAFRLI PAKKY
Sequences:
>Translated_325_residues MNLHLFLASLAATLSLGIAAQASPAKVACVGDSITFGSGLKPGEARYPQVLATLMGPDFDVRGFGNPGKTAGDYPGQAGR WYGSTREHKQALDFKADIYICNLGINDTGRWWNPELFSKGYEALLQAWKNANPKARFFAWGLLGPDYRGPLNKKAFPGNC YPDVRKYAGSDNGSAANRPEAEKLIAAVARKYKVSLFDALHPLSDHPEWYVDGLHPTEQGARRIAEITFAKLAKSLKIKQ PVPRLEPGTGNVIINNPGNSGILLDGWKLTDGSNTLIFENSTVIHPKDRLIIAIGPETQKDPTRPLQIKSAKSPAAFRLI PAKKY >Mature_325_residues MNLHLFLASLAATLSLGIAAQASPAKVACVGDSITFGSGLKPGEARYPQVLATLMGPDFDVRGFGNPGKTAGDYPGQAGR WYGSTREHKQALDFKADIYICNLGINDTGRWWNPELFSKGYEALLQAWKNANPKARFFAWGLLGPDYRGPLNKKAFPGNC YPDVRKYAGSDNGSAANRPEAEKLIAAVARKYKVSLFDALHPLSDHPEWYVDGLHPTEQGARRIAEITFAKLAKSLKIKQ PVPRLEPGTGNVIINNPGNSGILLDGWKLTDGSNTLIFENSTVIHPKDRLIIAIGPETQKDPTRPLQIKSAKSPAAFRLI PAKKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35408; Mature: 35408
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLHLFLASLAATLSLGIAAQASPAKVACVGDSITFGSGLKPGEARYPQVLATLMGPDFD CCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCEECCCCCCCCCCHHHHHHHHHHCCCCC VRGFGNPGKTAGDYPGQAGRWYGSTREHKQALDFKADIYICNLGINDTGRWWNPELFSKG CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEEEEEECCCCCCCCCCHHHHHHH YEALLQAWKNANPKARFFAWGLLGPDYRGPLNKKAFPGNCYPDVRKYAGSDNGSAANRPE HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCH AEKLIAAVARKYKVSLFDALHPLSDHPEWYVDGLHPTEQGARRIAEITFAKLAKSLKIKQ HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC PVPRLEPGTGNVIINNPGNSGILLDGWKLTDGSNTLIFENSTVIHPKDRLIIAIGPETQK CCCCCCCCCCCEEEECCCCCCEEEECEEEECCCCEEEECCCEEECCCCCEEEEECCCCCC DPTRPLQIKSAKSPAAFRLIPAKKY CCCCCEEEECCCCCCEEEEECCCCC >Mature Secondary Structure MNLHLFLASLAATLSLGIAAQASPAKVACVGDSITFGSGLKPGEARYPQVLATLMGPDFD CCCEEEHHHHHHHHHHCCCCCCCCCEEEEECCCEECCCCCCCCCCHHHHHHHHHHCCCCC VRGFGNPGKTAGDYPGQAGRWYGSTREHKQALDFKADIYICNLGINDTGRWWNPELFSKG CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEEEEEECCCCCCCCCCHHHHHHH YEALLQAWKNANPKARFFAWGLLGPDYRGPLNKKAFPGNCYPDVRKYAGSDNGSAANRPE HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCH AEKLIAAVARKYKVSLFDALHPLSDHPEWYVDGLHPTEQGARRIAEITFAKLAKSLKIKQ HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC PVPRLEPGTGNVIINNPGNSGILLDGWKLTDGSNTLIFENSTVIHPKDRLIIAIGPETQK CCCCCCCCCCCEEEECCCCCCEEEECEEEECCCCEEEECCCEEECCCCCEEEEECCCCCC DPTRPLQIKSAKSPAAFRLIPAKKY CCCCCEEEECCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA