| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734842
Identifier: 187734842
GI number: 187734842
Start: 391336
End: 394161
Strand: Reverse
Name: 187734842
Synonym: Amuc_0334
Alternate gene names: NA
Gene position: 394161-391336 (Counterclockwise)
Preceding gene: 187734843
Following gene: 187734841
Centisome position: 14.8
GC content: 59.41
Gene sequence:
>2826_bases ATGACGTTGATGTTCAAACTGATTTGGAGGGATCTGCGCGCCAACCCCGGCCGAATGGCTGTCAGCGTGTTCGCCATCCT TGTCTCCGTCAGCCTCATTGTATGGATGATGGGGAGCTATGATACGCTGGTCAGGGAGTTTGACAATGATGCGGAGGCCT ATATGGGGAATTATGACCTCTGCCTGGTGCCGGAGTCTCCCAAAGGGCCCCTTCCTCCCGGACAGTACCCGCAGTTCCGT GACCCGGAGCTGCCCGCCCGTCTGGCCGCCTCTCCCCTTGTGGAAACGGTGAACGCCGCGTGCCAGGTGCCGCGCCTCCA AATCGGCTGCGGAAATGAGCGGGGCAGCTTTGACGAGCAGACGCGCGACCGCATGGGAATTCCTCCCCAGAGCCCCATCC TGGTGGGAAACCATGCTGTGGAGTGTCCTTATGAATTGAAAGAGGGAATTTGGCCGGATATGGCTTCCTCCTCAGCCATG GAGGGGGTGCTGGGCAGCGGAAGCGCCAAATATTTCAGCGCGGGAGTGGGGACTGTCATGAACGTGCGCGTGGGAACGCA TGTGTACGACGTAAAGATTGTGGGCATCGTCAAGCAGGCCAAGGCCACCCCCGGCGTCATTATGGGGCCGGGCGGCATGT CCGGCCCGGCTTTTTCCTCCCTTTTTGTGCCCGTGAAGGTATGCGAGAAAATTACGGGGCAGCCTTTTGCCCCTAATTTG ATTTACGTTCAGCTCAAGGAAGGGGTGGACAAAAAGGAATTTGCTGAGAATTTCCGGCAGGAGCTGGTCCAGGCTTCCGC TGCGGTGGCGGATACGGATTCCATCATCCGGCGGCTTTCCAGCGACCGGGCCGTCCGTTCACAGAAGGATAGCGCGGAAA TGTCCGTCTGGCTTGTCCTGTTTTCCTGTATTTTCATTATTTTCACAACGTTGAGCATTGGCGTCAGCGAACGTGCCCGC AGACTGGCCCTGATGCGTGCTCTGGGGCTGGGGCGCATGCAAATTGCACTGCTGATTGCAGGGGAGGGGATTTTTCTGTG CATTCCGGCATTGCTGGGAGGGTTGGCCGCAGGCTTTTTCCTGGTGTACCTGCTGGAGGAAGGCTCTGCCTCTGTACCCG TGCTGACCTGGTCCACAGTATTAACCGCCGCCGTATGCGCTGTGGGCGGGGCCTTGCTGGCTTCCATTATTCCTGCGTGG CGCGCTTCCCGCCAGTCTCCGCTGGAAGCGGCCGTTCCTTCCTCCGGATTCATCGGGAAGGTGAGCCGTGTTCCTGTGTG GTCTGTCGTGGCGGGCCTCGCATGCGTGTGTCTTCAGCCTGCGGCCCTGCTGTTGCCGGGCCTGGAGGTAGAAACGCGCA AATGGATATTTTTCTGGCTGGGTTACCCCGGCCTGGTAGCCGGTGCGCTGTTTCTGGCCCCCACCTTCGTGCGCGTGACG GAGTGGGCCGGGGCATGGATTACCGGATTTCTGCTGCACGTTCCGCATTCTTTCCTGAAAATGCAGCTCAGCCGCAACCT CAGCCGTTCCGTGGGAACTGCCGTATCCATGTCTGTGGGCCTCTCTCTTTTTGTGGGGGTGCAGACATGGGGCTATTCCA TGCTGGTTCCTTTTTCCCCGGATACGTCAACACCCGGAACCCTGGTTTCCTTCCTGCATACGGAGTTCAAATCTGCGGAT GTTCCGGAGCTGATGGCGCGCCCCAGCCTGCGGAATTCCCGAATGTATCCCATCTACGTGGATGAACCGGATATTGCTCC GGCACAGATGAAAAGCCCCGGTTTTTCCGGGATGCGCAACCGTTCCATCGTACTGGCCGGCATTCCCGTGGCGGAGATGG CCGGGGGGAGCCATCCGCTGTTCAACCCCGTGTTTGTTTCCGGAAATCCGCAGGAGGCTTATGCCATGCTGGAATCCACC CGTTCTCTCCTGATTCCGGACACGTTTGCACGGACGGTGGGGTTGAAGGTCGGGGATGACTTGATGCTGGTTAATCCGTC TTCCCGGGAACGCCGTTCCGGAAATGAGCCCTCTGCCGGTATTCGCGGCCGGGGCAGGGGTGGCGCCGTACGGGGAGAAC CCTGGAAGGTGGCGGGAATAGTTTCCTTCCCCGGCTGGCATTGGTTGACCAAGACCAGCGGAATGCGCGTGCGCCGCGGG GGTTTTGTTGCCGCTTTGGCGATTGCCGATGAACGCTGGCTCAAAGAGGAATACGCTCATCAGGGATTCCAGTTTATCTG GGGGGATACTGCTCCGGGGATCAGCAACGTGGAACTTCAGAACGACCTGGGGGAATACGCCCTGATGAAGGTGCGGGAGC AGGAAAACGGAGGGGAAGGCGCCAAGCCTCTGGTGAAGGCCCTGACCCGGGAAAGCCTGGGAGGAAGCGTTACCAGCCGC GGGGACGATGTGATTTTTACGATGAGCAAGCTTCCCATCATCATGATGGTGATCGCCGTTCTGGCCGTACTTAACACCGT CCTGGCTTCCGTGCAGTCCCGCCGCCGGGAGTTTGGATTGATGCGTGCGGTGGGCGTGCCGGGCGGCATGGTGATGCGGA TGCTCTGGGCGGAAACGCTGATGGTTTCCCTGTGCTCCGTTGTCATGAGTCTTGTGCTGGGAGTCCTGGGCGCCTGGTGC TCCATCCAGATTTTGGAATACGGCTATCACTTCGGCGTCGTTACTCCTCCTGTCACGATGCCTTGGGCGCATCTGGCCTG TGCTGTGCTTTTGGTGCTTTCCCTCTCATCCTTGGCGTGCCTTCTGCCTGCGTGGCGCATGAAGCATGCGTCCGTAACGG ATTTGCTTTCCGTTCGCGAGGGGTAG
Upstream 100 bases:
>100_bases TACTCAAGGACGGCAGCATTGTGGACGACAGATCCACAGCGGAATTTGCCGGTCCTGCGGAATTGTCCTCCTTCTATGAA CGTACGCTGAATGACGCCTT
Downstream 100 bases:
>100_bases GGGGCATTCAGGATGTTCTTTGTTGCAACATAGTTGATAATTGAATAAATAGAAGCATTAATCAATGCTTTGGCGCTGGG AACAGCCGGGTTGGAATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: ABC Transporter Integral Membrane Protein
Number of amino acids: Translated: 941; Mature: 940
Protein sequence:
>941_residues MTLMFKLIWRDLRANPGRMAVSVFAILVSVSLIVWMMGSYDTLVREFDNDAEAYMGNYDLCLVPESPKGPLPPGQYPQFR DPELPARLAASPLVETVNAACQVPRLQIGCGNERGSFDEQTRDRMGIPPQSPILVGNHAVECPYELKEGIWPDMASSSAM EGVLGSGSAKYFSAGVGTVMNVRVGTHVYDVKIVGIVKQAKATPGVIMGPGGMSGPAFSSLFVPVKVCEKITGQPFAPNL IYVQLKEGVDKKEFAENFRQELVQASAAVADTDSIIRRLSSDRAVRSQKDSAEMSVWLVLFSCIFIIFTTLSIGVSERAR RLALMRALGLGRMQIALLIAGEGIFLCIPALLGGLAAGFFLVYLLEEGSASVPVLTWSTVLTAAVCAVGGALLASIIPAW RASRQSPLEAAVPSSGFIGKVSRVPVWSVVAGLACVCLQPAALLLPGLEVETRKWIFFWLGYPGLVAGALFLAPTFVRVT EWAGAWITGFLLHVPHSFLKMQLSRNLSRSVGTAVSMSVGLSLFVGVQTWGYSMLVPFSPDTSTPGTLVSFLHTEFKSAD VPELMARPSLRNSRMYPIYVDEPDIAPAQMKSPGFSGMRNRSIVLAGIPVAEMAGGSHPLFNPVFVSGNPQEAYAMLEST RSLLIPDTFARTVGLKVGDDLMLVNPSSRERRSGNEPSAGIRGRGRGGAVRGEPWKVAGIVSFPGWHWLTKTSGMRVRRG GFVAALAIADERWLKEEYAHQGFQFIWGDTAPGISNVELQNDLGEYALMKVREQENGGEGAKPLVKALTRESLGGSVTSR GDDVIFTMSKLPIIMMVIAVLAVLNTVLASVQSRRREFGLMRAVGVPGGMVMRMLWAETLMVSLCSVVMSLVLGVLGAWC SIQILEYGYHFGVVTPPVTMPWAHLACAVLLVLSLSSLACLLPAWRMKHASVTDLLSVREG
Sequences:
>Translated_941_residues MTLMFKLIWRDLRANPGRMAVSVFAILVSVSLIVWMMGSYDTLVREFDNDAEAYMGNYDLCLVPESPKGPLPPGQYPQFR DPELPARLAASPLVETVNAACQVPRLQIGCGNERGSFDEQTRDRMGIPPQSPILVGNHAVECPYELKEGIWPDMASSSAM EGVLGSGSAKYFSAGVGTVMNVRVGTHVYDVKIVGIVKQAKATPGVIMGPGGMSGPAFSSLFVPVKVCEKITGQPFAPNL IYVQLKEGVDKKEFAENFRQELVQASAAVADTDSIIRRLSSDRAVRSQKDSAEMSVWLVLFSCIFIIFTTLSIGVSERAR RLALMRALGLGRMQIALLIAGEGIFLCIPALLGGLAAGFFLVYLLEEGSASVPVLTWSTVLTAAVCAVGGALLASIIPAW RASRQSPLEAAVPSSGFIGKVSRVPVWSVVAGLACVCLQPAALLLPGLEVETRKWIFFWLGYPGLVAGALFLAPTFVRVT EWAGAWITGFLLHVPHSFLKMQLSRNLSRSVGTAVSMSVGLSLFVGVQTWGYSMLVPFSPDTSTPGTLVSFLHTEFKSAD VPELMARPSLRNSRMYPIYVDEPDIAPAQMKSPGFSGMRNRSIVLAGIPVAEMAGGSHPLFNPVFVSGNPQEAYAMLEST RSLLIPDTFARTVGLKVGDDLMLVNPSSRERRSGNEPSAGIRGRGRGGAVRGEPWKVAGIVSFPGWHWLTKTSGMRVRRG GFVAALAIADERWLKEEYAHQGFQFIWGDTAPGISNVELQNDLGEYALMKVREQENGGEGAKPLVKALTRESLGGSVTSR GDDVIFTMSKLPIIMMVIAVLAVLNTVLASVQSRRREFGLMRAVGVPGGMVMRMLWAETLMVSLCSVVMSLVLGVLGAWC SIQILEYGYHFGVVTPPVTMPWAHLACAVLLVLSLSSLACLLPAWRMKHASVTDLLSVREG >Mature_940_residues TLMFKLIWRDLRANPGRMAVSVFAILVSVSLIVWMMGSYDTLVREFDNDAEAYMGNYDLCLVPESPKGPLPPGQYPQFRD PELPARLAASPLVETVNAACQVPRLQIGCGNERGSFDEQTRDRMGIPPQSPILVGNHAVECPYELKEGIWPDMASSSAME GVLGSGSAKYFSAGVGTVMNVRVGTHVYDVKIVGIVKQAKATPGVIMGPGGMSGPAFSSLFVPVKVCEKITGQPFAPNLI YVQLKEGVDKKEFAENFRQELVQASAAVADTDSIIRRLSSDRAVRSQKDSAEMSVWLVLFSCIFIIFTTLSIGVSERARR LALMRALGLGRMQIALLIAGEGIFLCIPALLGGLAAGFFLVYLLEEGSASVPVLTWSTVLTAAVCAVGGALLASIIPAWR ASRQSPLEAAVPSSGFIGKVSRVPVWSVVAGLACVCLQPAALLLPGLEVETRKWIFFWLGYPGLVAGALFLAPTFVRVTE WAGAWITGFLLHVPHSFLKMQLSRNLSRSVGTAVSMSVGLSLFVGVQTWGYSMLVPFSPDTSTPGTLVSFLHTEFKSADV PELMARPSLRNSRMYPIYVDEPDIAPAQMKSPGFSGMRNRSIVLAGIPVAEMAGGSHPLFNPVFVSGNPQEAYAMLESTR SLLIPDTFARTVGLKVGDDLMLVNPSSRERRSGNEPSAGIRGRGRGGAVRGEPWKVAGIVSFPGWHWLTKTSGMRVRRGG FVAALAIADERWLKEEYAHQGFQFIWGDTAPGISNVELQNDLGEYALMKVREQENGGEGAKPLVKALTRESLGGSVTSRG DDVIFTMSKLPIIMMVIAVLAVLNTVLASVQSRRREFGLMRAVGVPGGMVMRMLWAETLMVSLCSVVMSLVLGVLGAWCS IQILEYGYHFGVVTPPVTMPWAHLACAVLLVLSLSSLACLLPAWRMKHASVTDLLSVREG
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 101536; Mature: 101405
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLMFKLIWRDLRANPGRMAVSVFAILVSVSLIVWMMGSYDTLVREFDNDAEAYMGNYDL CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCE CLVPESPKGPLPPGQYPQFRDPELPARLAASPLVETVNAACQVPRLQIGCGNERGSFDEQ EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH TRDRMGIPPQSPILVGNHAVECPYELKEGIWPDMASSSAMEGVLGSGSAKYFSAGVGTVM HHHHCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCEE NVRVGTHVYDVKIVGIVKQAKATPGVIMGPGGMSGPAFSSLFVPVKVCEKITGQPFAPNL EEEECCEEEEEEEEEEHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE IYVQLKEGVDKKEFAENFRQELVQASAAVADTDSIIRRLSSDRAVRSQKDSAEMSVWLVL EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH FSCIFIIFTTLSIGVSERARRLALMRALGLGRMQIALLIAGEGIFLCIPALLGGLAAGFF HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH LVYLLEEGSASVPVLTWSTVLTAAVCAVGGALLASIIPAWRASRQSPLEAAVPSSGFIGK HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCC VSRVPVWSVVAGLACVCLQPAALLLPGLEVETRKWIFFWLGYPGLVAGALFLAPTFVRVT CCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH EWAGAWITGFLLHVPHSFLKMQLSRNLSRSVGTAVSMSVGLSLFVGVQTWGYSMLVPFSP HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEECCCEEEEEEECC DTSTPGTLVSFLHTEFKSADVPELMARPSLRNSRMYPIYVDEPDIAPAQMKSPGFSGMRN CCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCC RSIVLAGIPVAEMAGGSHPLFNPVFVSGNPQEAYAMLESTRSLLIPDTFARTVGLKVGDD CEEEEECCCHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCCCEECCHHHHHHHCCEECCC LMLVNPSSRERRSGNEPSAGIRGRGRGGAVRGEPWKVAGIVSFPGWHWLTKTSGMRVRRG EEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCEEECC GFVAALAIADERWLKEEYAHQGFQFIWGDTAPGISNVELQNDLGEYALMKVREQENGGEG CEEEEEEHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC AKPLVKALTRESLGGSVTSRGDDVIFTMSKLPIIMMVIAVLAVLNTVLASVQSRRREFGL HHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MRAVGVPGGMVMRMLWAETLMVSLCSVVMSLVLGVLGAWCSIQILEYGYHFGVVTPPVTM HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PWAHLACAVLLVLSLSSLACLLPAWRMKHASVTDLLSVREG CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC >Mature Secondary Structure TLMFKLIWRDLRANPGRMAVSVFAILVSVSLIVWMMGSYDTLVREFDNDAEAYMGNYDL HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCCE CLVPESPKGPLPPGQYPQFRDPELPARLAASPLVETVNAACQVPRLQIGCGNERGSFDEQ EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH TRDRMGIPPQSPILVGNHAVECPYELKEGIWPDMASSSAMEGVLGSGSAKYFSAGVGTVM HHHHCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCEE NVRVGTHVYDVKIVGIVKQAKATPGVIMGPGGMSGPAFSSLFVPVKVCEKITGQPFAPNL EEEECCEEEEEEEEEEHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE IYVQLKEGVDKKEFAENFRQELVQASAAVADTDSIIRRLSSDRAVRSQKDSAEMSVWLVL EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH FSCIFIIFTTLSIGVSERARRLALMRALGLGRMQIALLIAGEGIFLCIPALLGGLAAGFF HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH LVYLLEEGSASVPVLTWSTVLTAAVCAVGGALLASIIPAWRASRQSPLEAAVPSSGFIGK HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCC VSRVPVWSVVAGLACVCLQPAALLLPGLEVETRKWIFFWLGYPGLVAGALFLAPTFVRVT CCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHH EWAGAWITGFLLHVPHSFLKMQLSRNLSRSVGTAVSMSVGLSLFVGVQTWGYSMLVPFSP HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEECCCEEEEEEECC DTSTPGTLVSFLHTEFKSADVPELMARPSLRNSRMYPIYVDEPDIAPAQMKSPGFSGMRN CCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCC RSIVLAGIPVAEMAGGSHPLFNPVFVSGNPQEAYAMLESTRSLLIPDTFARTVGLKVGDD CEEEEECCCHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCCCEECCHHHHHHHCCEECCC LMLVNPSSRERRSGNEPSAGIRGRGRGGAVRGEPWKVAGIVSFPGWHWLTKTSGMRVRRG EEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCEEECC GFVAALAIADERWLKEEYAHQGFQFIWGDTAPGISNVELQNDLGEYALMKVREQENGGEG CEEEEEEHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC AKPLVKALTRESLGGSVTSRGDDVIFTMSKLPIIMMVIAVLAVLNTVLASVQSRRREFGL HHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MRAVGVPGGMVMRMLWAETLMVSLCSVVMSLVLGVLGAWCSIQILEYGYHFGVVTPPVTM HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PWAHLACAVLLVLSLSSLACLLPAWRMKHASVTDLLSVREG CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA